JBrowse Update#141

Merged

bgruening merged 44 commits intomasterfrom

Jun 11, 2015

Commits on May 25, 2015

Make parameters more generic
Eric Rasche
committed
reorganise code layout, support bigwig/bam
Eric Rasche
committed
Add test data
Eric Rasche
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Reorg tool interface
Eric Rasche
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Use configfiles for communication
Eric Rasche
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Add support for VCF data
Eric Rasche
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Automatically generate SNP track on demand
Eric Rasche
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Added example test file
Eric Rasche
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Mention test file
Eric Rasche
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Rename according to docs
Eric Rasche
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Remove wiggle mentions, they can convert
Eric Rasche
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Remove debugging
Eric Rasche
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Implement min/max for bigwig data
Eric Rasche
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Initial stab at internal support of blastxml
Eric Rasche
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Bam tracks now working
Eric Rasche
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Add two new tools from the CPT
Eric Rasche
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Add headers
Eric Rasche
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Update jbrowse tool to support blast
Eric Rasche
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Version bump
Eric Rasche
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Support for match/match_part
Eric Rasche
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OOPify
Eric Rasche
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Match type implemented for gff3
Eric Rasche
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Reorg + vcf support
Eric Rasche
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Add categories
Eric Rasche
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Nicer function name
Eric Rasche
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Handle category labels now
Eric Rasche
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Split into two new repos
Eric Rasche
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Depend on samtools
Eric Rasche
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Add more test data
Eric Rasche
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Add JBrowse bundle
Eric Rasche
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Add JBrowse dependencies
Eric Rasche
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Commits on May 26, 2015

Copy and paste scripts
Eric Rasche
committed
Migrate to logging, xml typo
Eric Rasche
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Commits on Jun 10, 2015

Bump version
Eric Rasche
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Use symlinks instead of copying datasets
Eric Rasche
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More concise min/max routine
Eric Rasche
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Remove duplicate packages
Eric Rasche
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Move to download_store
Eric Rasche
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Commits on Jun 11, 2015

Fix english
Eric Rasche
committed
Slightly less error prone code
Eric Rasche
committed
Better output name
Eric Rasche
committed
Whitespace fix
Eric Rasche
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Corret XML error
Eric Rasche
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Replace scripts with symlinks
Eric Rasche
committed