add wrapper for telogator2#7481
Conversation
|
will stay in draft mode until I can add the tool for building reference files |
Smeds
force-pushed
the
add-telogator2
branch
from
d52f7fa to
cc172e9
Compare
tools/telogator2/telogator2.xml
Outdated
|
|
||
| <section name="reference_opts" title="Reference Options" expanded="false"> | ||
| <param name="custom_reference" argument="-t" type="data" format="fasta" optional="true" label="Custom reference FASTA" help="Optional custom telogator reference FASTA file. If not provided, built-in human T2T reference will be used."/> | ||
| <param name="kmer_file" argument="-k" type="data" format="txt" optional="true" label="Telomere kmers file" help="Optional telomere kmers file (required for non-human organisms like mouse or maize)"/> |
There was a problem hiding this comment.
Any more info in this?
There was a problem hiding this comment.
Information about the kmer file is currently very sparse on in the repo. I have asked them to add more information about it.
There was a problem hiding this comment.
@bernt-matthias I'm in the process of adding information to there git-repo about the format of the file. Should it also be included in the wrapper or would it be enough to reference the git-repo?
bernt-matthias
left a comment
bernt-matthias
left a comment
There was a problem hiding this comment.
Lets do these 2-4 changes and then its good to go.
Co-authored-by: M Bernt <m.bernt@ufz.de>
@bernt-matthias done! |
SaimMomin12
left a comment
SaimMomin12
left a comment
There was a problem hiding this comment.
Small suggestions :)
Co-authored-by: Saim Momin <64724322+SaimMomin12@users.noreply.github.com>
Co-authored-by: Saim Momin <64724322+SaimMomin12@users.noreply.github.com>
|
Deployment status: success https://github.com/galaxyproject/tools-iuc/actions/runs/19936734844 |
4 participants
FOR CONTRIBUTOR: