Added architecture to support loaders along with a loader for PFOA #73
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'docs/**' | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - 'docs/**' | |
| types: [opened, synchronize] | |
| # Allows workflows to be manually triggered | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| code-quality: | |
| name: code-quality | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: repository checkout step | |
| uses: actions/checkout@v4 | |
| - name: python environment step | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: install pre-commit | |
| run: python3 -m pip install pre-commit | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get changed files | |
| id: changed-files | |
| run: | | |
| CHANGED_FILES=$(git diff --name-only ${{ github.event.pull_request.base.sha }} ${{ github.sha }} | tr '\n' ' ') | |
| echo "CHANGED_FILES=${CHANGED_FILES}" >> $GITHUB_ENV | |
| - name: Print changed files | |
| run: | | |
| echo "Changed files: $CHANGED_FILES" | |
| - name: Run pre-commit on changed files | |
| run: | | |
| if [ -n "$CHANGED_FILES" ]; then | |
| pre-commit run --color always --files $CHANGED_FILES --show-diff-on-failure | |
| else | |
| echo "No changed files to check." | |
| fi | |
| - name: check missing __init__ files | |
| run: bash build_tools/fail_on_missing_init_files.sh | |
| run-tests-no-extras: | |
| needs: code-quality | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| os: [ubuntu-latest, windows-latest, macOS-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - run: git remote set-branches origin 'main' | |
| - run: git fetch --depth 1 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install package and dependencies | |
| run: | | |
| python -m pip install .[dev] --no-cache-dir | |
| - name: Show dependencies | |
| run: python -m pip list | |
| - name: Show available branches | |
| run: git branch -a | |
| - name: Run tests | |
| run: | | |
| python -m pytest pyaptamer -p no:warnings |