Search results

MoleculeLoader is not sklearn-CV-sliceable, breaking AptaNet + Benchmarking

Status: Open.

#706 In gc-os-ai/pyaptamer;

· siddharth7113 opened on Jun 25, 2026

[ENH] Adding AptaDiff algorithm to pyaptamer

Status: Open.

Task

#697 In gc-os-ai/pyaptamer;

· siddharth7113 opened on Jun 22, 2026

[BUG] KMerEncoder ignores RNA 'U' nucleotides and distorts frequencies

Status: Open.

#696 In gc-os-ai/pyaptamer;

· purvanshjoshi opened on Jun 21, 2026

[ENH] Redesigning MoleculeLoader interface and possible edge cases

Status: Open.

#682 In gc-os-ai/pyaptamer;

· siddharth7113 opened on Jun 11, 2026

[MNT] Expose PositionalEncoding and TokenPredictor in aptatrans/layers/__init__.py

Status: Open.

#675 In gc-os-ai/pyaptamer;

· Ramrajnagar opened on May 23, 2026

[MNT] Move import warnings to module level and add AMINO_ACIDS to __all__ in _pseaac_utils.py

Status: Open.

#673 In gc-os-ai/pyaptamer;

· Ramrajnagar opened on May 23, 2026

[ENH] Standardize configuration management for training and inference pipelines

Status: Open.

#665 In gc-os-ai/pyaptamer;

· ayushk687 opened on May 14, 2026

Unify input handling between AptaTrans and AptaNet

Status: Open.

#664 In gc-os-ai/pyaptamer;

· ayushk687 opened on May 14, 2026

[BUG] AptaTrans.__init__() raises AssertionError instead of ValueError for invalid input

Status: Open.

#658 In gc-os-ai/pyaptamer;

· onkar717 opened on May 8, 2026

[MNT] aa_props() uses 'type' as parameter name, shadowing Python builtin

Status: Open.

#656 In gc-os-ai/pyaptamer;

· onkar717 opened on May 8, 2026

[BUG] PositionalEncoding.forward() dropout check is always truthy

Status: Open.

#654 In gc-os-ai/pyaptamer;

· onkar717 opened on May 8, 2026

[BUG] AptaTransEncoderLightning crashes with NameError for invalid encoder_typ

Status: Open.

#652 In gc-os-ai/pyaptamer;

· onkar717 opened on May 8, 2026