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Pull requests: gc-os-ai/pyaptamer

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Pull requests list

[BUG] Replace assert with ValueError in PositionalEncoding.forward()
#668 opened May 16, 2026 by tarun-227 Loading…
2 tasks
1
[MNT] [Dependabot](deps-dev): Update ruff requirement from >=0.15.12 to >=0.15.13 maintenance
#667 opened May 14, 2026 by dependabot Bot Loading…
Create refactor: introduce shared tokenizer utilities for aptamer seq…
#666 opened May 14, 2026 by ayushk687 Loading…
6 tasks done
1
[DOC] Document sequence key returned by MCTS.run
#663 opened May 14, 2026 by pragnyanramtha Loading…
1
1
[MNT] [Dependabot](deps): Update torch requirement from >=2.11.0 to >=2.12.0 maintenance
#662 opened May 13, 2026 by dependabot Bot Loading…
[FEAT] (aptable): add AptaBLE module with symmetric bidirectional cross-attention interaction map
#661 opened May 9, 2026 by DZDasherKTB Loading…
1
[BUG] fix: 7 critical bugs across training, inference, and benchmarking pipelines
#660 opened May 9, 2026 by DZDasherKTB Loading…
[BUG] Use ValueError instead of AssertionError for input validation in AptaTrans
#659 opened May 8, 2026 by onkar717 Loading…
1
[MNT] Rename 'type' parameter to 'output_type' in aa_props()
#657 opened May 8, 2026 by onkar717 Loading…
1
[BUG] Fix always-truthy dropout check in PositionalEncoding.forward()
#655 opened May 8, 2026 by onkar717 Loading…
1
[BUG] Add encoder_type validation in AptaTransEncoderLightning
#653 opened May 8, 2026 by onkar717 Loading…
1
[BUG] Remove global np.random.seed() from AptaNetClassifier/Regressor.fit()
#651 opened May 7, 2026 by onkar717 Loading…
1
[BUG] Fix clean_protein_seq replacing invalid AAs with Asparagine (N)
#649 opened May 7, 2026 by onkar717 Loading…
1
[BUG] Fix BERT masking in MaskedDataset: correct 80/10/10 split and remove double-sampling
#647 opened May 7, 2026 by onkar717 Loading…
3 tasks done
1
[BUG] Fix dangling word in augment_reverse Returns docstring
#645 opened May 6, 2026 by Ishiezz Loading…
2 tasks done
1
[ENH] Add sktime benchmark integration for Evaluator compatibility
#643 opened May 4, 2026 by pranavchoudhary-tech Loading…
3 tasks done
1
[ENH] Expose AptaNet hyperparameters and add configuration flexibility
#642 opened May 4, 2026 by pranavchoudhary-tech Loading…
4 tasks done
1
[BUG] Fix skbase contract implementation to ensure compliance
#641 opened May 4, 2026 by pranavchoudhary-tech Loading…
3 tasks done
1
[MNT] Fix BaseTransform abstract method exception types and add missing module-level attributes
#637 opened May 3, 2026 by Ishiezz Loading…
2 tasks done
1
[BUG] Fix/issue 550 lowercase protein seq
#635 opened May 3, 2026 by adt-kmr Loading…
[BUG] Benchmarking._to_scorers() silently drops duplicate metric names
#634 opened May 3, 2026 by direkkakkar319-ops Contributor Loading…
3 tasks done
[DOC] Add Jupyter Notebook Tutorial for sktime Benchmarking
#633 opened May 2, 2026 by pranavchoudhary-tech Loading…
1
[BUG] Fix GreedyEncoder crash and silent failure on empty words dict
#632 opened May 2, 2026 by Ishiezz Loading…
3 tasks done
1
[BUG] Fix filter_words RuntimeWarning on empty input
#630 opened May 2, 2026 by Ishiezz Loading…
3 tasks done
1
ENH: Move pairs_to_features and generate_kmer_vecs to transformer interface (#174)
#628 opened May 2, 2026 by DashratRajpurohit Loading…
1
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