[BUG] Replace AlphaDropout with Dropout in AptaNet layers (ReLU misma… #1255
Workflow file for this run
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| name: Test | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'docs/**' | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - 'docs/**' | |
| types: [opened, synchronize] | |
| # Allows workflows to be manually triggered | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| code-quality: | |
| name: code-quality | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: repository checkout step | |
| uses: actions/checkout@v6 | |
| - name: python environment step | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.11" | |
| - name: install pre-commit | |
| run: python3 -m pip install pre-commit | |
| - name: Checkout code | |
| uses: actions/checkout@v6 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get changed files | |
| id: changed-files | |
| run: | | |
| CHANGED_FILES=$(git diff --name-only ${{ github.event.pull_request.base.sha }} ${{ github.sha }} | tr '\n' ' ') | |
| echo "CHANGED_FILES=${CHANGED_FILES}" >> $GITHUB_ENV | |
| - name: Print changed files | |
| run: | | |
| echo "Changed files: $CHANGED_FILES" | |
| - name: Run pre-commit on changed files | |
| run: | | |
| if [ -n "$CHANGED_FILES" ]; then | |
| pre-commit run --color always --files $CHANGED_FILES --show-diff-on-failure | |
| else | |
| echo "No changed files to check." | |
| fi | |
| - name: check missing __init__ files | |
| run: bash build_tools/fail_on_missing_init_files.sh | |
| detect-notebooks-change: | |
| needs: code-quality | |
| name: detect change affecting notebooks | |
| runs-on: ubuntu-latest | |
| permissions: | |
| pull-requests: read | |
| outputs: | |
| notebooks: ${{ steps.check.outputs.notebooks }} | |
| steps: | |
| - uses: actions/checkout@v6 | |
| with: | |
| fetch-depth: 0 # Needed to access the full git history | |
| - name: Fetch main branch | |
| run: git fetch origin main | |
| - name: Check if examples, pyaptamer or pyproject.toml changed | |
| id: check | |
| run: | | |
| if git diff --quiet origin/main -- examples/ pyaptamer/ pyproject.toml; then | |
| echo "No notebook related changes" | |
| echo "notebooks=false" >> $GITHUB_OUTPUT | |
| else | |
| echo "Detected changes in notebooks or pyaptamer" | |
| echo "notebooks=true" >> $GITHUB_OUTPUT | |
| fi | |
| run-jupyter-notebooks: | |
| needs: detect-notebooks-change | |
| if: ${{ needs.detect-notebooks-change.outputs.notebooks == 'true' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - run: git remote set-branches origin 'main' | |
| - run: git fetch --depth 1 | |
| - name: Set up Python | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.11" | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install package and dependencies | |
| run: | | |
| python -m pip install .[dev] --no-cache-dir | |
| python -m pip install jupyter nbconvert nbformat --no-cache-dir | |
| - name: Show dependencies | |
| run: python -m pip list | |
| - name: Show available branches | |
| run: git branch -a | |
| - name: Run jupyter notebooks | |
| run: | | |
| python -m pip install jupyter nbconvert "ipykernel>=6.29.5,<7.0.0" | |
| python -m ipykernel install --user --name=python3 --display-name "Python 3 (CI)" | |
| bash build_tools/run_all_notebooks.sh | |
| run-tests-no-extras: | |
| needs: code-quality | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"] | |
| os: [ubuntu-latest, windows-latest, macOS-latest] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| HF_TOKEN: ${{ secrets.HF_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - run: git remote set-branches origin 'main' | |
| - run: git fetch --depth 1 | |
| - name: Set up Python | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install package and dependencies | |
| run: | | |
| python -m pip install .[dev] --no-cache-dir | |
| - name: Show dependencies | |
| run: python -m pip list | |
| - name: Show available branches | |
| run: git branch -a | |
| - name: Run tests | |
| run: | | |
| python -m pytest pyaptamer -p no:warnings |