[MNT] [Dependabot](deps): Update numpy requirement from >=2.0.2 to >=2.2.6 (#548)

Updates the requirements on [numpy](https://github.com/numpy/numpy) to
permit the latest version.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/numpy/numpy/releases">numpy's
releases</a>.</em></p>
<blockquote>
<h2>v2.2.6 (May 17, 2025)</h2>
<h1>NumPy 2.2.6 Release Notes</h1>
<p>NumPy 2.2.6 is a patch release that fixes bugs found after the 2.2.5
release. It is a mix of typing fixes/improvements as well as the normal
bug fixes and some CI maintenance.</p>
<p>This release supports Python versions 3.10-3.13.</p>
<h2>Contributors</h2>
<p>A total of 8 people contributed to this release. People with a
&quot;+&quot; by
their names contributed a patch for the first time.</p>
<ul>
<li>Charles Harris</li>
<li>Ilhan Polat</li>
<li>Joren Hammudoglu</li>
<li>Marco Gorelli +</li>
<li>Matti Picus</li>
<li>Nathan Goldbaum</li>
<li>Peter Hawkins</li>
<li>Sayed Adel</li>
</ul>
<h2>Pull requests merged</h2>
<p>A total of 11 pull requests were merged for this release.</p>
<ul>
<li><a
href="https://redirect.github.com/numpy/numpy/pull/28778">#28778</a>:
MAINT: Prepare 2.2.x for further development</li>
<li><a
href="https://redirect.github.com/numpy/numpy/pull/28851">#28851</a>:
BLD: Update vendor-meson to fix module_feature conflicts
arguments...</li>
<li><a
href="https://redirect.github.com/numpy/numpy/pull/28852">#28852</a>:
BUG: fix heap buffer overflow in np.strings.find</li>
<li><a
href="https://redirect.github.com/numpy/numpy/pull/28853">#28853</a>:
TYP: fix <code>NDArray[floating] + float</code> return type</li>
<li><a
href="https://redirect.github.com/numpy/numpy/pull/28864">#28864</a>:
BUG: fix stringdtype singleton thread safety</li>
<li><a
href="https://redirect.github.com/numpy/numpy/pull/28865">#28865</a>:
MAINT: use OpenBLAS 0.3.29</li>
<li><a
href="https://redirect.github.com/numpy/numpy/pull/28889">#28889</a>:
MAINT: from_dlpack thread safety fixes</li>
<li><a
href="https://redirect.github.com/numpy/numpy/pull/28913">#28913</a>:
TYP: Fix non-existent <code>CanIndex</code> annotation in
<code>ndarray.setfield</code></li>
<li><a
href="https://redirect.github.com/numpy/numpy/pull/28915">#28915</a>:
MAINT: Avoid dereferencing/strict aliasing warnings</li>
<li><a
href="https://redirect.github.com/numpy/numpy/pull/28916">#28916</a>:
BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate.</li>
<li><a
href="https://redirect.github.com/numpy/numpy/pull/28966">#28966</a>:
TYP: reject complex scalar types in ndarray.__ifloordiv__</li>
</ul>
<h2>Checksums</h2>
<h3>MD5</h3>
<pre><code>259343f056061f6eadb2f4b8999d06d4
numpy-2.2.6-cp310-cp310-macosx_10_9_x86_64.whl
16fa85488e149489ce7ee044d7b0d307
numpy-2.2.6-cp310-cp310-macosx_11_0_arm64.whl
f01b7aea9d2b76b1eeb49766e615d689
numpy-2.2.6-cp310-cp310-macosx_14_0_arm64.whl
f2ddc2b22517f6e31caa1372b12c2499
numpy-2.2.6-cp310-cp310-macosx_14_0_x86_64.whl
52190e22869884f0870eb3df7a283ca9
numpy-2.2.6-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
8f382b9ca6770db600edd5ea2447a925
numpy-2.2.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
e604aae2ef6e01fb92ecc39aca0424d9
numpy-2.2.6-cp310-cp310-musllinux_1_2_aarch64.whl
</code></pre>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/numpy/numpy/commit/2b686f659642080e2fc708719385de6e8be0955f"><code>2b686f6</code></a>
Merge pull request <a
href="https://redirect.github.com/numpy/numpy/issues/28980">#28980</a>
from charris/prepare-2.2.6</li>
<li><a
href="https://github.com/numpy/numpy/commit/ed418286bf91434d6f8af7133645de7b4ea3f807"><code>ed41828</code></a>
REL: Prepare for the NumPy 2.2.6 release [wheel build]</li>
<li><a
href="https://github.com/numpy/numpy/commit/83e4e7f87101e1bdc5976b686d89331e28fc77e9"><code>83e4e7f</code></a>
Merge pull request <a
href="https://redirect.github.com/numpy/numpy/issues/28966">#28966</a>
from charris/backport-28958</li>
<li><a
href="https://github.com/numpy/numpy/commit/248f0cba3bd4081bde896009b1f10e975a608eaa"><code>248f0cb</code></a>
TYP: add rejection-tests for complex <code>ndarray</code> floordiv</li>
<li><a
href="https://github.com/numpy/numpy/commit/5bad9dabb3b875922ffe74e6909986cf89a46a7c"><code>5bad9da</code></a>
TYP: reject complex scalar types in
<code>ndarray.__ifloordiv__</code></li>
<li><a
href="https://github.com/numpy/numpy/commit/6c4277507121547f4b3f704797c7aecdae8c2273"><code>6c42775</code></a>
Merge pull request <a
href="https://redirect.github.com/numpy/numpy/issues/28915">#28915</a>
from charris/backport-28892</li>
<li><a
href="https://github.com/numpy/numpy/commit/4277e7cb1e9fe48c43b47adde6d2d5268b584584"><code>4277e7c</code></a>
Merge pull request <a
href="https://redirect.github.com/numpy/numpy/issues/28916">#28916</a>
from charris/backport-28898</li>
<li><a
href="https://github.com/numpy/numpy/commit/bd1c863f4a17ef29a2b16f64af0b9eb4c4d2edde"><code>bd1c863</code></a>
BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate. (<a
href="https://redirect.github.com/numpy/numpy/issues/28898">#28898</a>)</li>
<li><a
href="https://github.com/numpy/numpy/commit/87d1d8a0dc43b240a2c5607b524940114f660b6f"><code>87d1d8a</code></a>
MAINT: Avoid dereferencing/strict aliasing warnings during complex casts
in `...</li>
<li><a
href="https://github.com/numpy/numpy/commit/9e506595b1b49bdc1459937d95903f56e0514fe7"><code>9e50659</code></a>
Merge pull request <a
href="https://redirect.github.com/numpy/numpy/issues/28913">#28913</a>
from charris/backport-28908</li>
<li>Additional commits viewable in <a
href="https://github.com/numpy/numpy/compare/v2.0.2...v2.2.6">compare
view</a></li>
</ul>
</details>
<br />

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Author: dependabot[bot]

pyproject.toml

@@ -16,7 +16,7 @@ dependencies = [
     "biopython>=1.83",
     "datasets>=4.8.5",
     "lightning>=2.6.1",
-    "numpy>=2.0.2",
+    "numpy>=2.2.6",
     "pandas>=2.3.3",
     "scikit-base",
     "torch>=2.11.0",