Rebase to main fork#1

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dicara wants to merge 275 commits intomasterfrom

rebase-to-main-fork

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Commits on Sep 5, 2018

Commits on Sep 7, 2018

Hide gear menu when width < 1000 pixels & device is mobile -- too small to use effectively.
jrobinso
committed

Commits on Sep 8, 2018

simplify document and window event management
jrobinso
committed

Commits on Sep 10, 2018

Commits on Sep 13, 2018

Prevent "mouseup" from bubbling up from popups
jrobinso
committed
Support whole-genome views for feature tracks with explicit indexed=false settings. May or may not be safe to support this otherwise.
jrobinso
committed

Commits on Sep 17, 2018

Track menu bug fix -- raw html was ignored
jrobinso
committed

Commits on Sep 27, 2018

RNA structure track (".bp" files)
jrobinso
committed

Commits on Sep 28, 2018

Commits on Oct 1, 2018

Commits on Oct 3, 2018

Commits on Oct 4, 2018

issue743fix : fix to select correct alignmentBlock when the clicked position(base) is right after an insertion (#744)

kaushik51094
authored and
jrobinso
committed

Commits on Oct 5, 2018

misc
jrobinso
committed
tmp
jrobinso
committed

Commits on Oct 8, 2018

Commits on Oct 10, 2018

Commits on Oct 11, 2018

Commits on Oct 12, 2018

Commits on Oct 14, 2018

Commits on Oct 15, 2018

Commits on Oct 19, 2018

Commits on Oct 20, 2018

Commits on Oct 21, 2018

Update README.md
jrobinso
authored

Commits on Oct 22, 2018

igv.xhr tests
jrobinso
committed

Commits on Oct 23, 2018

Update README.md
jrobinso
authored

Commits on Oct 24, 2018

Dat final responsive navbar (#761)
jrobinso
authored

Commits on Oct 25, 2018

Dat final content header (#762)
jrobinso
authored

Commits on Oct 26, 2018

Update README.md
helgathorv
authored

Commits on Oct 29, 2018

Commits on Oct 30, 2018

Commits on Oct 31, 2018

Initial support for "points" graphType - wig tracks.
jrobinso
committed

Commits on Nov 1, 2018

navbar. responsive tweaks. (#771)

turner
authored and
jrobinso
committed
Track Color Picker Rethink. (#772)

turner
authored and
jrobinso
committed

Commits on Nov 2, 2018

fix dev html bug
jrobinso
committed
Remove locus from igv-dev.html
jrobinso
committed
Track Render Fixes Specific to SVG Output. (#776)

turner
authored and
jrobinso
committed

Commits on Nov 3, 2018

SVG Output (#777)

turner
authored and
jrobinso
committed
wig track baseline tweak
jrobinso
committed
SVG Save. API signature improvements (#778)

turner
authored and
jrobinso
committed

Commits on Nov 4, 2018

Fix sort-by-base bug. Alignment rows with no overlapping base were improperly sorted.
jrobinso
committed

Commits on Nov 5, 2018

Fix npe exception in whole genome SVG rendering
jrobinso
committed

Commits on Nov 7, 2018

Whole Genome Ruler Track SVG Render. Git Issue 765. (#784)

turner
authored and
jrobinso
committed
SVG Render. Axis Rendered only for first panel in multi-locus. Git Issue 765. (#785)

turner
authored and
jrobinso
committed
faulty endianess init logic. Fixes #788
jrobinso
committed

Commits on Nov 8, 2018

multi-locus view. add inter-panel gap. (#787)

turner
authored and
jrobinso
committed
update all .html files in dev.
turner
committed

Commits on Nov 9, 2018

Update canvas2svg path
jrobinso
committed

Commits on Nov 10, 2018

cBio html update
jrobinso
committed

Commits on Nov 11, 2018

Issues around large canvas size (track swith many rows, bam and seg primarily)
jrobinso
committed

Commits on Nov 15, 2018

Commits on Nov 16, 2018

WGV Ruler Canvas. Include Fix for SEG Track. (#794)

turner
authored and
jrobinso
committed
generalize colorpicker functionality. For use by apps hosting igv.js (#798)

turner
authored and
jrobinso
committed

Commits on Nov 20, 2018

fixed decodeUTF8 function signature (#799)
jrobinso
committed

Commits on Nov 27, 2018

Responsive Navbar. DIY. No media-queries. (#800)

turner
authored and
jrobinso
committed

Commits on Nov 28, 2018

color picker updates (#801)

turner
authored and
jrobinso
committed

Commits on Nov 29, 2018

Seg track compressed mode (#803)
jrobinso
authored

Commits on Nov 30, 2018

Commits on Dec 6, 2018

Commits on Dec 7, 2018

UI tweaks (#805)

turner
authored and
jrobinso
committed

Commits on Dec 8, 2018

bug fix -- mouse handlers not added to sequence track
jrobinso
committed

Commits on Dec 9, 2018

Update README.md
jrobinso
authored

Commits on Dec 10, 2018

reset panning interval to 3x screen size
jrobinso
committed

Commits on Dec 12, 2018

Commits on Dec 15, 2018

Commits on Dec 16, 2018

Web app (#826)
jrobinso
authored

Commits on Dec 18, 2018

Commits on Dec 19, 2018

alignment sort bug fix
jrobinso
committed

Commits on Dec 31, 2018

Seg track - use "sample" for "sampleKey" if sampleKey is not defined
jrobinso
committed

Commits on Jan 2, 2019

Use simplified referenceFrame object locuschange event.
jrobinso
committed

Commits on Jan 11, 2019

Commits on Jan 12, 2019

Commits on Jan 14, 2019

Repair Icon creation and clean up css. (#833)

turner
authored and
jrobinso
committed
Fix CRAM bugs, fixes #834
jrobinso
committed

Commits on Jan 15, 2019

Commits on Jan 17, 2019

test refactoring
jrobinso
committed
Update cram bundle -- throw excpetion if content-range header is missing
jrobinso
committed
bug fix -- track type not correctly guessed for "cram" files
jrobinso
committed
CSS Issues (#837)
turner
authored
Add babel prior to uglify

Chris7
authored and
Daniel DiCara
committed
Add distributed files

Chris7
authored and
Daniel DiCara
committed