Megahit v1.2.9

• updated megahit version to 1.2.9

Call Me Variants

• Added bbtools callvariants.sh wrapper

Name Consensus

• added name parameter to consensus wrapper

Updated Consensus

• Fix genome-consensus creation, make it more robust

Consensus Fasta

• Updated consensus sequence wrapper.

MultiQC Version Fix

• Fixed MultiC version to 1.9, because v1.10 gave ~float error

SnpEff Version

• Added SnpEff wrapper by copying from snakemake wrappers main repo and updated SnpEff version from v4.3 to v5.0.
• Updated Sars-Cov-2 SnpEff database to v5.0

Rename Fasta

• updated sars-cov-2 fasta renaming wrapper

Align Your Q

• added lofreq alignqual wrapper

Index Log

• fix gatk indexfeaturefile log collection