chore: release 1.0.0

[github-actions]

🤖 I have created a release *beep* *boop*

1.0.0 (2025-03-24)

Features

• add collapsed-tree support calculations via gotree rules (6391a79)
• add further plots to compare across models and missingness (e8cebab)
• also look at consensus tree of all maximum likelihood trees (33c2dd7)
• clean up and improve max_missing topologies summary plot (70cd27d)
• complete cluster_info_dist.R script (cce6e1d)
• compute and plot cluster information distance for all relevant tree sets (9917ebb)
• generate and collect bootstrap convergence and rfdist metrics (ff634fb)
• implement cluster selection and qc for more focused consensus tree (2bf3be7)
• implement consensus tree building from CID cluster among mlTrees with highest average likelihood (c3eff03)
• improve error messages backtraces in cluster_info_dist.R (5497d31)
• overhaul summary plots (add information criteria, add ecdf and histogram plots) (7f111f6)
• switch axes and facet labels in large overview plots (89183f7)

Bug Fixes

• adjust file name downstream of previous change (4ef281d)
• adjust file name extraction pattern (7cf439e)
• allow big plots (e79a8ce)
• always compute support based on raxml-ng bootstraps with gotree (8b08105)
• amend previous commit (441d5c5)
• better error backtrace (7ebc0bb)
• file path and resources adjustments (04e63ef)
• hard-coded output file names will give you missing output exceptions (c200c06)
• highlight model setup with best respective score(s) (a31e600)
• include new (and required) r-protoclust in treedist script dependencies (6ea1cc6)
• load protoclust in cluster_info_dist.R (c606784)
• revert to working plot layout (09aaf43)
• update names as needed (27e4609)
• use extended regular expressions for sed extraction (3a72bf7)

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