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Model 29.1 Anemia YLDs #275

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Model 29.1 Anemia YLDs #275

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07399c4
Remove oral iron effect on hemoglobin, add stratification
tylerdy Feb 17, 2026
8ceda2d
Add full term outcome stratification registration
tylerdy Feb 17, 2026
fc3c02d
Update model results dir
tylerdy Feb 19, 2026
62b4955
Update for new parquet storage format
tylerdy Feb 19, 2026
7170e81
remove IFA calibration in hemoglobin and update model dir
Feb 20, 2026
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3 changes: 2 additions & 1 deletion src/vivarium_gates_mncnh/components/observers.py
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Expand Up @@ -67,6 +67,7 @@ def register_stratifications(self, builder: Builder) -> None:
PREGNANCY_OUTCOMES.STILLBIRTH_OUTCOME,
PREGNANCY_OUTCOMES.LIVE_BIRTH_OUTCOME,
PREGNANCY_OUTCOMES.PARTIAL_TERM_OUTCOME,
PREGNANCY_OUTCOMES.FULL_TERM_OUTCOME,
]
),
requires_columns=[COLUMNS.PREGNANCY_OUTCOME],
Expand Down Expand Up @@ -534,7 +535,7 @@ def configuration_defaults(self) -> dict[str, Any]:
"stratification": {
self.get_configuration_name(): {
"exclude": [],
"include": ["age_group"],
"include": ["age_group", "pregnancy_outcome"],
},
},
}
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2 changes: 1 addition & 1 deletion src/vivarium_gates_mncnh/constants/paths.py
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Expand Up @@ -31,5 +31,5 @@

# Update for new model results directory after model changes and runs
# This should match the directory after /mnt/team/simulation_sicence/pub/models/vivarium_gates_mncnh/results/
MODEL_RESULTS_DIR = "model26.0"
MODEL_RESULTS_DIR = "model29.1"
MODEL_NOTEBOOKS_DIR = BASE_DIR.parent.parent / "tests" / "model_notebooks"
2 changes: 1 addition & 1 deletion src/vivarium_gates_mncnh/model_specifications/model_spec.yaml
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Expand Up @@ -37,7 +37,7 @@ components:
- InterventionRiskEffect('azithromycin')
- InterventionRiskEffect('misoprostol')
- OralIronInterventionExposure() # IFA and MMS
- OralIronEffectOnHemoglobin()
# - OralIronEffectOnHemoglobin()
- OralIronEffectOnStillbirth()
- AdditiveRiskEffect('risk_factor.iron_folic_acid_supplementation', 'risk_factor.birth_weight.birth_exposure')
- AdditiveRiskEffect('risk_factor.multiple_micronutrient_supplementation', 'risk_factor.birth_weight.birth_exposure')
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