Complete tutorial implementation and results processing

docs/source/onboarding_resources/tutorial/environment_lock_conda.txt

@@ -3,27 +3,27 @@
 # platform: linux-64
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2
-https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.12.14-hbcca054_0.conda
-https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.43-h712a8e2_2.conda
-https://conda.anaconda.org/conda-forge/noarch/tzdata-2024b-hc8b5060_0.conda
-https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h77fa898_1.conda
+https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2025.1.31-hbcca054_0.conda
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.43-h712a8e2_4.conda
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h767d61c_2.conda
+https://conda.anaconda.org/conda-forge/noarch/tzdata-2025a-h78e105d_0.conda
 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h77fa898_1.conda
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h767d61c_2.conda
 https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.4-h5888daf_0.conda
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_1.conda
-https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.6.3-hb9d3cd8_1.conda
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_0.conda
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_2.conda
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.6.4-hb9d3cd8_0.conda
 https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda
-https://conda.anaconda.org/conda-forge/linux-64/openssl-3.4.0-h7b32b05_1.conda
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.4.1-h7b32b05_0.conda
 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda
-https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2
 https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda
-https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.47.2-hee588c1_0.conda
+https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.49.1-hee588c1_2.conda
 https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda
 https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda
-https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-he02047a_1.conda
+https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8c095d6_2.conda
 https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_h4845f30_101.conda
-https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8228510_1.conda
-https://conda.anaconda.org/conda-forge/linux-64/python-3.11.11-h9e4cc4f_1_cpython.conda
-https://conda.anaconda.org/conda-forge/noarch/setuptools-75.8.0-pyhff2d567_0.conda
+https://conda.anaconda.org/conda-forge/linux-64/python-3.11.11-h9e4cc4f_2_cpython.conda
+https://conda.anaconda.org/conda-forge/noarch/setuptools-75.8.2-pyhff2d567_0.conda
 https://conda.anaconda.org/conda-forge/noarch/wheel-0.45.1-pyhd8ed1ab_1.conda
-https://conda.anaconda.org/conda-forge/noarch/pip-24.3.1-pyh8b19718_2.conda
+https://conda.anaconda.org/conda-forge/noarch/pip-25.0.1-pyh8b19718_0.conda

docs/source/onboarding_resources/tutorial/environment_lock_pip.txt

@@ -1,120 +1,127 @@
-anyio==4.8.0
+ansicolors==1.1.8
+anyio==4.9.0
 argon2-cffi==23.1.0
 argon2-cffi-bindings==21.2.0
 arrow==1.3.0
 asttokens==3.0.0
-async-lru==2.0.4
-attrs==24.3.0
-babel==2.16.0
-beautifulsoup4==4.12.3
+async-lru==2.0.5
+attrs==25.3.0
+babel==2.17.0
+beautifulsoup4==4.13.3
 bleach==6.2.0
-blosc2==3.0.0
-certifi==2024.12.14
+blosc2==3.2.0
+certifi==2025.1.31
 cffi==1.17.1
 charset-normalizer==3.4.1
 click==8.1.8
 comm==0.2.2
-debugpy==1.8.11
-decorator==5.1.1
+debugpy==1.8.13
+decorator==5.2.1
 defusedxml==0.7.1
 dill==0.3.9
-executing==2.1.0
+entrypoints==0.4
+executing==2.2.0
 fastjsonschema==2.21.1
 fqdn==1.5.1
-gbd_mapping==4.1.2
+gbd_mapping==4.1.3
 h11==0.14.0
 httpcore==1.0.7
 httpx==0.28.1
 idna==3.10
 ipykernel==6.29.5
-ipython==8.31.0
+ipython==9.0.2
+ipython_pygments_lexers==1.1.1
 ipywidgets==8.1.5
 isoduration==20.11.0
 jedi==0.19.2
-Jinja2==3.1.5
+Jinja2==3.1.6
 joblib==1.4.2
 json5==0.10.0
 jsonpointer==3.0.0
 jsonschema==4.23.0
 jsonschema-specifications==2024.10.1
 jupyter==1.1.1
 jupyter-console==6.6.3
-jupyter-events==0.11.0
+jupyter-events==0.12.0
 jupyter-lsp==2.2.5
 jupyter_client==8.6.3
 jupyter_core==5.7.2
 jupyter_server==2.15.0
 jupyter_server_terminals==0.5.3
-jupyterlab==4.3.4
+jupyterlab==4.3.6
 jupyterlab_pygments==0.3.0
 jupyterlab_server==2.27.3
 jupyterlab_widgets==3.0.13
-layered_config_tree==2.2.1
+layered_config_tree==3.0.0
 loguru==0.7.3
 MarkupSafe==3.0.2
 matplotlib-inline==0.1.7
-mistune==3.1.0
+mistune==3.1.2
 msgpack==1.1.0
 nbclient==0.10.2
-nbconvert==7.16.5
+nbconvert==7.16.6
 nbformat==5.10.4
 ndindex==1.9.2
 nest-asyncio==1.6.0
 networkx==3.4.2
 networkx-stubs==0.0.1
-notebook==7.3.2
+notebook==7.3.3
 notebook_shim==0.2.4
 numexpr==2.10.2
 numpy==1.26.4
 overrides==7.7.0
 packaging==24.2
 pandas==2.2.3
-pandas-stubs==2.2.3.241126
+pandas-stubs==2.2.3.250308
 pandocfilters==1.5.1
+papermill==2.6.0
 parso==0.8.4
 pexpect==4.9.0
 platformdirs==4.3.6
 prometheus_client==0.21.1
-prompt_toolkit==3.0.48
-psutil==6.1.1
+prompt_toolkit==3.0.50
+psutil==7.0.0
 ptyprocess==0.7.0
 pure_eval==0.2.3
 py-cpuinfo==9.0.0
-pyarrow==18.1.0
+pyarrow==19.0.1
 pycparser==2.22
 Pygments==2.19.1
 python-dateutil==2.9.0.post0
-python-json-logger==3.2.1
-pytz==2024.2
+python-json-logger==3.3.0
+pytz==2025.1
 PyYAML==6.0.2
-pyzmq==26.2.0
-referencing==0.35.1
+pyzmq==26.3.0
+referencing==0.36.2
 requests==2.32.3
 rfc3339-validator==0.1.4
 rfc3986-validator==0.1.1
-risk_distributions==2.1.2
-rpds-py==0.22.3
-scipy==1.15.0
+risk_distributions==2.1.3
+rpds-py==0.23.1
+scipy==1.15.2
 Send2Trash==1.8.3
 six==1.17.0
 sniffio==1.3.1
 soupsieve==2.6
 stack-data==0.6.3
 tables==3.10.2
+tenacity==9.0.0
 terminado==0.18.1
 tinycss2==1.4.0
 tornado==6.4.2
+tqdm==4.67.1
 traitlets==5.14.3
 types-python-dateutil==2.9.0.20241206
-types-pytz==2024.2.0.20241221
+types-pytz==2025.1.0.20250204
 types-PyYAML==6.0.12.20241230
 typing_extensions==4.12.2
-tzdata==2024.2
+tzdata==2025.1
 uri-template==1.3.0
 urllib3==2.3.0
-vivarium==3.2.13
-vivarium_inputs==5.2.3
-vivarium_public_health==3.1.4
+uv==0.6.6
+vivarium==3.3.12
+vivarium_inputs==5.2.6
+vivarium_public_health==4.0.0
 wcwidth==0.2.13
 webcolors==24.11.1
 webencodings==0.5.1