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@atc3 atc3 commented Oct 20, 2025

Running the latest main branch fails because of deprecated functions/objects in packages. This change reverts several packages, and with this I'm able to complete a local training run (some other issues I've had to fix which I'll submit separate PRs for later).

  • cattrs - reverted to avoid registering Path from the upath module
  • xarray reverted to restore ops module
  • funlib.persistence reverted to latest release, prior referenced branch was merged
  • bioimageio.core[pytorch] frozen to 0.7 to preserve pytorch converter

May be more changes necessary to dependencies that could be necessary in the future. Maybe we should freeze other dependencies here to avoid issues in the future. Happy to share my conda package list

atc3 and others added 2 commits October 16, 2025 15:34
Replaced the specific version of 'funlib.persistence' with a general reference.
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