Added Pipeline for LSM and PSOCT Data#83
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…oordinates from tiles
… NIfTI output support
…sult handling in mosaic2d function
… header generation
…eation from tile information
…complex functions
…and rename spool_file to spool_data for clarity
# Conflicts: # linc_convert/modalities/lsm/__init__.py
Updated the Dockerfile to install all dependencies and set the entrypoint to use Poetry.
Refactor Dockerfile to use multi-stage builds for better dependency management and security practices.
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It looks like tests/test_stitch.py and tests/test_utils_stitch.py are effectively the same file for the PS-OCT pipeline with slightly different formatting.
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I have reviewed the LSM changes and package changes (docker, pyproject, etc.). And fixed the CI failures. I will add the human LSM conversion pipeline on top of these changes.
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kabilar
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July 1, 2026 16:46
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