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TypeError when running ag3.snp_allele_frequencies for some transcripts Label issues #71: Issue #840 opened by jonbrenas
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Add support for Anopheles darlingi (Adar1.x) Label issues #70: Issue #837 opened by jonbrenas
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Code test coverage needed in base.py Label issues #69: Issue #836 opened by leehart
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Segmentation fault during CI checks Label issues #68: Issue #835 opened by leehart
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latest_doc complains that poetry.lock is obsolete Label issues #67: Issue #831 opened by jonbrenas
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Adir1 and Amin1 fail test_diplotype_clustering.py - no sex_call data Label issues #66: Issue #830 opened by tristanpwdennis
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Adir1 and Amin testtest_sample_metadata.py fails - no contam_ data Label issues #65: Issue #829 opened by tristanpwdennis
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Adir1 and Amin1 test_g123.py test fail - can't find haplotype data Label issues #64: Issue #828 opened by tristanpwdennis
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ag3.plot_frequencies_time_series not plotting values correctly Label issues #63: Issue #827 opened by josieshepherd
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ag3.plot_frequencies_time_series error bars API Label issues #62: Issue #826 opened by josieshepherd
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Site analyses in unphased datasets Label issues #61: Issue #823 opened by tristanpwdennis
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Can't get snp_calls on v3.0 with sample query Label issues #60: Issue #822 opened by EricRLucas
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Ag3 metadata and SNP data sample count mismatch Label issues #59: Issue #821 opened by tristanpwdennis
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Modify Fst function to have option for empty upper triangle. Label issues #58: Issue #820 opened by KellyLBennett
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Add advanced haplotype clustering Label issues #57: Issue #819 opened by leehart
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Bug: Incorrect GCS path construction for phenotype data functions Label issues #56: Issue #815 opened by mohamed-laarej
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Genome features doesn't seem to find genes in Af1 Label issues #55: Issue #814 opened by jonbrenas
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latest_docs GH workfow fails due to out-of-date poetry.lock Label issues #54: Issue #812 opened by leehart
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Incorrect parameter color in plot_haplotype_network Label issues #53: Issue #738 reopened by jonbrenas
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Improve documentation for phenotype functions Label issues #52: Issue #809 opened by jonbrenas
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Reassess use of "private" columns in prep_samples_for_cohort_grouping and build_cohorts_from_sample_grouping Label issues #51: Issue #808 opened by leehart
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Duplicate prep_samples_for_cohort_grouping functions Label issues #50: Issue #807 opened by leehart
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Reassess preventing "intermediate" or "unassigned" taxon being used Label issues #49: Issue #806 opened by leehart
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Modify snp_allele_frequencies to allow investigation of any genomic region. Label issues #48: Issue #805 opened by KellyLBennett
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Update the contact address in the docs Label issues #47: Issue #800 opened by leehart
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