Curation + CRDC mapping updates

all_valid_values.csv

@@ -76,6 +76,7 @@ dataset_species,Human Patient,
 dataset_species,Human Cell Line,
 dataset_species,Mouse,
 dataset_species,Multispecies,
+dataset_species,Not Applicable,
 dataset_species,Opossum,
 dataset_species,Rabbit,Oryctolagus cuniculus
 dataset_species,Rat,
@@ -7931,6 +7932,36 @@ acquisitionMethod,Sentinel node biopsy,
 acquisitionMethod,Shave biopsy,
 acquisitionMethod,Surgical Resection,
 acquisitionMethod,Unknown,
+treatmentType,3-Dimensional Conformal Radiation Therapy,
+treatmentType,Allogeneic Hematopoietic Stem Cell Transplantation,
+treatmentType,Autologous Stem Cell Transplantation,
+treatmentType,Brachytherapy,
+treatmentType,Cellular Therapy,
+treatmentType,Chemotherapy,
+treatmentType,Concurrent Chemoradiation,
+treatmentType,Conventional Radiotherapy,
+treatmentType,Electron Beam Radiation Therapy,
+treatmentType,External Beam Radiation Therapy,
+treatmentType,High-Dose Rate Brachytherapy,
+treatmentType,Hormone Therapy,
+treatmentType,Immunotherapy,
+treatmentType,Intensity-Modulated Radiation Therapy,
+treatmentType,Low-Dose Rate Brachytherapy,
+treatmentType,Not Reported,
+treatmentType,Organ Transplantation,
+treatmentType,Palliative Care,
+treatmentType,Pharmacotherapy,
+treatmentType,Photon Beam Radiation Therapy,
+treatmentType,Proton Beam Radiation Therapy,
+treatmentType,Radiation Therapy,
+treatmentType,Radiofrequency Ablation,
+treatmentType,Radiopharmaceutical,
+treatmentType,Stem Cell Transplant,
+treatmentType,Stereotactic Body Radiation Therapy,
+treatmentType,Stereotactic Radiosurgery,
+treatmentType,Surgical Procedure,
+treatmentType,Targeted Molecular Therapy,
+treatmentType,Unknown,
 consortium_funding_agency,NIH,
 dataset_file_format,AVI,
 dataset_file_format,BAI,
@@ -8156,6 +8187,17 @@ grant_number,CA274507,
 grant_number,CA274506,
 grant_number,CA274511,
 grant_number,CA282451,
+grant_number,CA284085,
+grant_number,CA283749,
+grant_number,CA289564,
+grant_number,CA293470,
+grant_number,CA279722,
+grant_number,CA290115,
+grant_number,CA279948,
+grant_number,CA281216,
+grant_number,CA292382,
+grant_number,CA290442,
+grant_number,CA293853,
 assay,10-cell RNA Sequencing,10-cell rna sequencing
 assay,16S Ribosomal Gene Sequencing Assay,"16s ribosomal gene sequencing assay, 16S rRNA sequencing, 16S Ribosomal RNA Sequencing, 16S rRNA gene amplification, 16S ribosomal RNA sequencing"
 assay,3' RNA-seq,
@@ -8868,6 +8910,265 @@ duo,GS,
 duo,DS,
 duo,GRU,
 duo,PS,
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+studyLicense,CC BY 3.0,
+studyLicense,CC BY 4.0,
+studyLicense,CC BY-NC 4.0,
+studyLicense,CC BY-NC 3.0,
+studyLicense,CC BY-SA 4.0,
+studyLicense,CC BY-NC-SA 4.0,
 ed_topic,Computational Model Development,
 ed_topic,Computational Resource,
 ed_topic,Diversity/Equity/Inclusion,
@@ -10273,36 +10574,6 @@ lymphStage,N4,
 lymphStage,NX,
 lymphStage,Unknown,
 lymphStage,Not Reported,
-treatmentType,3-Dimensional Conformal Radiation Therapy,
-treatmentType,Allogeneic Hematopoietic Stem Cell Transplantation,
-treatmentType,Autologous Stem Cell Transplantation,
-treatmentType,Brachytherapy,
-treatmentType,Cellular Therapy,
-treatmentType,Chemotherapy,
-treatmentType,Concurrent Chemoradiation,
-treatmentType,Conventional Radiotherapy,
-treatmentType,Electron Beam Radiation Therapy,
-treatmentType,External Beam Radiation Therapy,
-treatmentType,High-Dose Rate Brachytherapy,
-treatmentType,Hormone Therapy,
-treatmentType,Immunotherapy,
-treatmentType,Intensity-Modulated Radiation Therapy,
-treatmentType,Low-Dose Rate Brachytherapy,
-treatmentType,Not Reported,
-treatmentType,Organ Transplantation,
-treatmentType,Palliative Care,
-treatmentType,Pharmacotherapy,
-treatmentType,Photon Beam Radiation Therapy,
-treatmentType,Proton Beam Radiation Therapy,
-treatmentType,Radiation Therapy,
-treatmentType,Radiofrequency Ablation,
-treatmentType,Radiopharmaceutical,
-treatmentType,Stem Cell Transplant,
-treatmentType,Stereotactic Body Radiation Therapy,
-treatmentType,Stereotactic Radiosurgery,
-treatmentType,Surgical Procedure,
-treatmentType,Targeted Molecular Therapy,
-treatmentType,Unknown,
 metStage,M0,
 metStage,M1,
 metStage,M1a,
@@ -10319,6 +10590,11 @@ recurrence,Not Applicable,
 recurrence,Not Allowed to Collect,
 recurrence,No,
 recurrence,Censored,
+vitalStatus,Unspecified,
+vitalStatus,Unknown,
+vitalStatus,Dead,
+vitalStatus,Alive,
+vitalStatus,Not reported,
 institution_location_state,Alabama,
 institution_location_state,Alaska,
 institution_location_state,American Samoa,
@@ -10575,14 +10851,14 @@ deIdMethod,Manual,
 deIdMethod,Semiautomatic,
 deIdMethod,Automatic,
 deIdMethod,Not Applicable,
-studyLicense,CC BY 3.0,
-studyLicense,CC BY 4.0,
-studyLicense,CC BY-NC 4.0,
-studyLicense,CC BY-NC 3.0,
 indexDate,Diagnosis Date ,
 indexDate,Enrollment Date,
 indexDate,Collection Date,
 indexDate,Birth Date,
+dataPermission,Agreement,
+dataPermission,Attestation,
+dataPermission,Award,
+dataPermission,Other,
 tool_accessibility,Open Access,
 tool_accessibility,Open Access (With Restrictions),
 tool_accessibility,Restricted Access,