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Refactor suite of tools in nmdc-mcp #68

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@sujaypatil96

We have a lot of tools in src/nmdc_mcp/tools.py like get_study_for_biosample(), get_biosamples_for_study(), etc. which get records based on a given id, and all of these methods can use the /nmdcschema/linked_instances endpoint at: https://api.microbiomedata.org/docs#/Metadata%20access/get_linked_instances_nmdcschema_linked_instances_get

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