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Refactor suite of tools in nmdc-mcp

Status: Open.

#68 In microbiomedata/nmdc-mcp;

· sujaypatil96 opened on Oct 23, 2025

Duplicate descriptions for tools in src/nmdc_mcp/main.py and src/nmdc_mcp/tools.py

Status: Open.

#67 In microbiomedata/nmdc-mcp;

· sujaypatil96 opened on Oct 22, 2025

get_samples_by_annotation has too large a payload. Follow progressive disclosure principles

Status: Open.

#66 In microbiomedata/nmdc-mcp;

· cmungall opened on Oct 22, 2025

Deploy as a streaming http server

Status: Open.

#63 In microbiomedata/nmdc-mcp;

· cmungall opened on Oct 22, 2025

README.md and LICENSE files contradict one another

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

Bug

#60 In microbiomedata/nmdc-mcp;

· eecavanna opened on Sep 19, 2025

Decouple client.py from server build

Status: Open.

#58 In microbiomedata/nmdc-mcp;

· shreddd opened on Aug 12, 2025

Add description to GitHub repository

Status: Open.

Task

#57 In microbiomedata/nmdc-mcp;

· eecavanna opened on Aug 12, 2025

get the functional-agg-cleanup to pass code QC, merge, and demonstrate

Status: Open.

#55 In microbiomedata/nmdc-mcp;

· turbomam opened on Aug 11, 2025

refactor get_samples_by_annotation to avoid overload

Status: Open.

#54 In microbiomedata/nmdc-mcp;

· shreddd opened on Aug 7, 2025

fix use of projection in fetch_functional_annotation_records

Status: Open.

#53 In microbiomedata/nmdc-mcp;

· shreddd opened on Aug 7, 2025

Add or revise tools to discover genes that contain multiple PFAM annotations

Status: Open.

#51 In microbiomedata/nmdc-mcp;

· turbomam opened on Aug 6, 2025

Add pagination to functional_annotation search

Status: Open.

#49 In microbiomedata/nmdc-mcp;

· shreddd opened on Aug 2, 2025