Update read based taxonomy workflow to use SingleM #652
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Updated version to v1.1.0 and added SingleM outputs.
2 tasks
Added multiple output specifications for GOTTCHA2, Centrifuge, and Kraken2 reports and plots.
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@chienchi can you confirm if paired should be true or false for singleM? The default in the wdl for read based analysis is false. |
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Ah. The paired should be true for interleaved paired-end data input by default. Thanks for catching it. It can be overwritten by input.json but I will make a patch release v1.1.1. |
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@chienchi i see that you bumped the patch version but the wdl still has the paired boolean set to false. |
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oops 😳 , sorry forgetting to add it and commit the change. I patched it to version v1.1.2. |
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Updated version to v1.1.0 and added SingleM outputs. For now it keeps all optional output files. We'll update import automation later since we don't have any JGI results in jamo yet.