v1.1.3-rc.9

Testing URL -> path changes

What's Changed

• update in workflow_process to handle manifest allow list permutations by @jasmynp in #665
• moving another verbose log statements to debug by @jasmynp in #667

Full Changelog: 1.1.3-rc.6...1.1.3-rc.9

v1.1.3-rc.8

What's Changed

• moving another verbose log statements to debug by @jasmynp in #667

Full Changelog: 1.1.3-rc.7...1.1.3-rc.8

v1.1.3-rc.7

What's Changed

• changed some log statements for scheduler to only print in debug mode by @jasmynp in #664
• update in workflow_process to handle manifest allow list permutations by @jasmynp in #665

Full Changelog: 1.1.3-rc.5...1.1.3-rc.7

v1.1.3-rc.6

Updated testing for URLs to paths and log statements for scheduler

What's Changed

• Refactor JGI file staging code to remove direct database dependencies by @aclum in #658
• changed some log statements for scheduler to only print in debug mode by @jasmynp in #664

Full Changelog: 1.1.3-rc.4...1.1.3-rc.6

v1.1.3-rc.5

Just testing manifest changes

What's Changed

• Bump jaws client version, bump nmdc-schema version, fix readsqc by @aclum in #660
• fix downstream manifest workflow execution records and failed ct bug by @jasmynp in #663
• Branch 1.1.2 by @aclum in #661
• Refactor JGI file staging code to remove direct database dependencies by @aclum in #658

Full Changelog: 1.1.2-rc.1...1.1.3-rc.5

v1.1.3-rc.4

Updated testing for URLs to paths and manifest testing

What's Changed

• 299 support manifest set records by @jasmynp in #604
• 261 add example test for validating json records against nmdc-schema using linkml by @aclum in #611
• Create README for JAMO ingest workflow by @Shalsh23 in #532
• Remove references to minter bind endpoint by @aclum in #616
• Update to jaws-client version 2.9 by @aclum in #615
• Update mags to v1.3.17 by @aclum in #617
• Bump ReadsQC to v1.0.20 by @aclum in #629
• Update poetry instructions by @aclum in #634
• 643 remove documentation about running standalone cromwell by @aclum in #644
• merge 605 and release-1.1.0 branches back to main by @jasmynp in #645
• 648 Update ReadsQC Version to v1.0.14-alpha.2 by @vlilanl in #649
• property fix for JawsRunner max_retries by @jasmynp in #651
• fix downstream manifest workflow execution records and failed ct bug by @jasmynp in #663
• Branch 1.1.2 by @aclum in #661

Full Changelog: v1.1.3...1.1.3-rc.4

v1.1.3-rc.3

Updated testing for URLs to paths

What's Changed

• 590 for nmdc schema v11.10.0 by @jasmynp in #592
• 585-add-dev-description-to-jaws-tags by @jasmynp in #591
• 594 import automation support for only importing raw data by @jasmynp in #595
• Update pyproject.toml author list by @aclum in #597
• Add time delay for JAWS submissions by @kaijli in #601
• README_developers by @mbthornton-lbl in #540
• update for nmdc release 2025.9 with nmdc-schema v11.11.0 by @jasmynp in #603
• 299 support manifest set records by @jasmynp in #604
• 261 add example test for validating json records against nmdc-schema using linkml by @aclum in #611
• Create README for JAMO ingest workflow by @Shalsh23 in #532
• Remove references to minter bind endpoint by @aclum in #616
• Update to jaws-client version 2.9 by @aclum in #615
• Update mags to v1.3.17 by @aclum in #617
• Remove direct mongo queries from scheduler - hotfix by @aclum in #624
• Update nmdc-schema to version 11.13.0 by @aclum in #626
• Bump ReadsQC to v1.0.20 by @aclum in #629
• 618 for merge with 1.0.6 by @kaijli in #631
• Fixing get.requests to not expect a body. Note that the local endpoin… by @jasmynp in #633
• Update poetry instructions by @aclum in #634
• bug fix to properly order the api params for RuntimeApiHandler by @jasmynp in #638
• update workflows.yaml for readsqc v1.0.14 by @aclum in #640
• 643 remove documentation about running standalone cromwell by @aclum in #644
• merge 605 and release-1.1.0 branches back to main by @jasmynp in #645
• 648 Update ReadsQC Version to v1.0.14-alpha.2 by @vlilanl in #649
• property fix for JawsRunner max_retries by @jasmynp in #651

Full Changelog: 1.1.3-rc.2...1.1.3-rc.3

v1.1.3

What's Changed

• Bump jaws client version, bump nmdc-schema version, fix readsqc by @aclum in #660

Full Changelog: 1.1.2...v1.1.3

v1.1.3-rc.2

Testing URLs to paths

What's Changed

• 590 for nmdc schema v11.10.0 by @jasmynp in #592
• 585-add-dev-description-to-jaws-tags by @jasmynp in #591
• 594 import automation support for only importing raw data by @jasmynp in #595
• Update pyproject.toml author list by @aclum in #597
• Add time delay for JAWS submissions by @kaijli in #601
• README_developers by @mbthornton-lbl in #540
• update for nmdc release 2025.9 with nmdc-schema v11.11.0 by @jasmynp in #603
• 299 support manifest set records by @jasmynp in #604
• 261 add example test for validating json records against nmdc-schema using linkml by @aclum in #611
• Create README for JAMO ingest workflow by @Shalsh23 in #532
• Remove references to minter bind endpoint by @aclum in #616
• Update to jaws-client version 2.9 by @aclum in #615
• Update mags to v1.3.17 by @aclum in #617
• Remove direct mongo queries from scheduler - hotfix by @aclum in #624
• Update nmdc-schema to version 11.13.0 by @aclum in #626
• Bump ReadsQC to v1.0.20 by @aclum in #629
• 618 for merge with 1.0.6 by @kaijli in #631
• Fixing get.requests to not expect a body. Note that the local endpoin… by @jasmynp in #633
• Update poetry instructions by @aclum in #634
• bug fix to properly order the api params for RuntimeApiHandler by @jasmynp in #638
• update workflows.yaml for readsqc v1.0.14 by @aclum in #640
• 643 remove documentation about running standalone cromwell by @aclum in #644
• merge 605 and release-1.1.0 branches back to main by @jasmynp in #645
• 648 Update ReadsQC Version to v1.0.14-alpha.2 by @vlilanl in #649
• property fix for JawsRunner max_retries by @jasmynp in #651

Full Changelog: 1.0.1-alpha.1...1.1.3-rc.2

v1.1.3-rc.1

Update metaMAGs to v1.3.18
Full Changelog: 1.1.2-rc.1...1.1.3-rc.1