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[codex] Add diagnostic AI priority subset#10365

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[codex] Add diagnostic AI priority subset#10365
dragon-ai-agent wants to merge 1 commit into
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feat/zebra

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Summary

This PR adds a lightweight MONDO representation for the rare disease diagnostic AI prioritization artifact described in #10364.

Changes:

The companion YAML has 431 initial MONDO IDs. Four are obsolete in this checkout and were intentionally left unannotated rather than inferred/remapped:

  • MONDO:0013935 obsolete Usher syndrome type 1J, replaced by MONDO:0012273
  • MONDO:0020732 obsolete progeria, replaced by MONDO:0015333
  • MONDO:0700294 obsolete CTCF-related neurodevelopmental disorder, replaced by MONDO:0014213
  • MONDO:0800029 obsolete interstitial lung disease 2, consider MONDO:0800497 and MONDO:0800504

Sources:

Part of #10364.

Validation

  • Extracted 431 unique initial IDs from the companion YAML.
  • Verified 427 active IDs have both subset tags and the Add MONDO subset for rare diseases prioritized for diagnostic AI development #10364 tracker after normalization.
  • Verified the 4 obsolete IDs remain unannotated.
  • Ran sh run.sh make NORM && mv NORM mondo-edit.obo from src/ontology.
  • Ran robot convert --catalog src/ontology/catalog-v001.xml -i src/ontology/mondo-edit.obo -f obo -o mondo-edit.TMP.obo.
  • Ran git diff --check.

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