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Refresh imports, Week 3 pipeline run to prepare for the release.

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The QC is failing because there are obsolete classes used in statements other than excluded_subClassOf for:

  • MONDO:0011397 'autosomal dominant cerebellar ataxia, deafness and narcolepsy' --> relationship: disease_has_feature HP:0030050 {source="MONDO:Wikidata"} ! obsolete Narcolepsy
  • MONDO:0001485 'atypical depressive disorder' --> relationship: disease_has_feature HP:0100786 ! obsolete Hypersomnia

>MONDO:0011397 'autosomal dominant cerebellar ataxia, deafness and narcolepsy' --> relationship: disease_has_feature HP:0030050 {source="MONDO:Wikidata"} ! obsolete Narcolepsy

I removed the annotation because narcolepsy can be with or without cataplexy (the "replaced by" term for "obsolete Narcolepsy), and therefore it is unclear whether updating the annotation using the "replaced by" suggested term (cataplexy) would be correct without deeper investigation

>MONDO:0001485 'atypical depressive disorder' --> relationship: disease_has_feature HP:0100786 ! obsolete Hypersomnia

I removed this annotation since the annotation with the replacement term for "obsolete Hypersomnia" already exists
The NCBITaxon update lead to 2 terms having the same logical definition. I removed the logical for one of the terms. These terms will be merged in the context of #9850
@sabrinatoro sabrinatoro merged commit 6177c04 into master Dec 22, 2025
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@sabrinatoro sabrinatoro deleted the issue_refresh-imports-19Dec25 branch December 22, 2025 19:39
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