namo

New Approach Methodology Ontology and Schema

Documentation Website

https://monarch-initiative.github.io/namo

Ontology

NAMO is a semantic data model with ontology-like elements. We export it as an ontology to facilitate browsing and ontology API calls:

• https://bioportal.bioontology.org/ontologies/NAMO

Repository Structure

• docs/ - mkdocs-managed documentation
  • elements/ - generated schema documentation (do not edit)
• examples/ - Examples of using the schema
• project/ - project files (these files are auto-generated, do not edit)
• src/ - source files (edit these)
  • namo
    • schema/ -- LinkML schema (edit this)
    • datamodel/ -- generated Python datamodel
• tests/ - Python tests
  • data/ - Example data

Developer Tools

There are several pre-defined command-recipes available. They are written for the command runner just. To list all pre-defined commands, run just or just --list.

Credits

This project uses the template linkml-project-copier published as doi:10.5281/zenodo.15163584.