-
Notifications
You must be signed in to change notification settings - Fork 133
Catalist: Patch Exception Handling #1818
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Open
IanRFerguson
wants to merge
3
commits into
main
Choose a base branch
from
ian/patch/catalist-zip-operation
base: main
Could not load branches
Branch not found: {{ refName }}
Loading
Could not load tags
Nothing to show
Loading
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
Open
Changes from all commits
Commits
File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
@@ -9,7 +9,7 @@ | |||||||||||||
| import time | ||||||||||||||
| import urllib | ||||||||||||||
| from pathlib import Path | ||||||||||||||
| from zipfile import ZipFile | ||||||||||||||
| from zipfile import ZipFile, is_zipfile | ||||||||||||||
|
|
||||||||||||||
| from parsons import Table | ||||||||||||||
| from parsons.sftp import SFTP | ||||||||||||||
|
|
@@ -371,11 +371,22 @@ def load_matches(self, id: str) -> Table: | |||||||||||||
| remote_filepaths = self.sftp.list_directory("/myDownloads/") | ||||||||||||||
| remote_filename = [filename for filename in remote_filepaths if id in filename][0] | ||||||||||||||
| remote_filepath = "/myDownloads/" + remote_filename | ||||||||||||||
|
|
||||||||||||||
| temp_file_zip = self.sftp.get_file( | ||||||||||||||
| remote_path=remote_filepath, export_chunk_size=DEFAULT_EXPORT_CHUNK_SIZE | ||||||||||||||
| ) | ||||||||||||||
| temp_dir = tempfile.mkdtemp() | ||||||||||||||
|
|
||||||||||||||
| if not is_zipfile(temp_file_zip): | ||||||||||||||
| raise RuntimeError( | ||||||||||||||
| f"Downloaded file for job {id} is not a valid zip file " | ||||||||||||||
| f"(size: {temp_file_zip.stat().st_size} bytes, remote path: {remote_filepath}). " | ||||||||||||||
| "The SFTP download may be corrupt or incomplete." | ||||||||||||||
| ) | ||||||||||||||
|
|
||||||||||||||
| logger.debug( | ||||||||||||||
| f"Download complete for job {id} (local size: {temp_file_zip.stat().st_size} bytes)." | ||||||||||||||
| ) | ||||||||||||||
|
Comment on lines
+386
to
+388
Collaborator
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. On an unrelated note, you might also want to use lazy formatting in your logger call, since f-strings are resolved even when the logger is not in debug mode.
Suggested change
|
||||||||||||||
| temp_dir = tempfile.mkdtemp() | ||||||||||||||
| with ZipFile(temp_file_zip) as zf: | ||||||||||||||
| zf.extractall(path=temp_dir) | ||||||||||||||
|
|
||||||||||||||
|
|
@@ -387,7 +398,7 @@ def load_matches(self, id: str) -> Table: | |||||||||||||
| def validate_table(self, table: Table, template_id: str = "48827") -> None: | ||||||||||||||
| """Validate table structure and contents.""" | ||||||||||||||
| if template_id != "48827": | ||||||||||||||
| logger.warn(f"No validator implemented for template {template_id}.") | ||||||||||||||
| logger.warning(f"No validator implemented for template {template_id}.") | ||||||||||||||
| return | ||||||||||||||
|
|
||||||||||||||
| expected_table_columns = [ | ||||||||||||||
|
|
||||||||||||||
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Uh oh!
There was an error while loading. Please reload this page.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
This will fix your test failure, not sure what happened here.