genome-kmers 1.0.0

genome-kmers 1.0.0 Release Notes

genome-kmers 1.0.0 adds support for the majority of k-mer calculations for k-mers defined on the forward strand.

What's Changed

• Convert project to src layout by @mrperkett in #1
• Remove unhelpful sba indices test cases by @mrperkett in #2
• Update README Intro, Setup, Basic Usage by @mrperkett in #3
• Update config info ahead of PyPI release by @mrperkett in #4
• Set up Read The Docs by @mrperkett in #5
• Add Kmers initialization methods by @mrperkett in #19
• Add Kmers sort for forward strand by @mrperkett in #20
• Add kmers sort profiling for forward strand by @mrperkett in #21
• Add kmer comparison function by @mrperkett in #23
• Add generator to yield kmers by group by @mrperkett in #25
• Add func to kmer generator to customize output by @mrperkett in #27
• Create numba funcs to get record loc info by @mrperkett in #29
• Add Kmers generate_get_kmer_info_func by @mrperkett in #31
• Add get_kmers generator by @mrperkett in #33
• Add filter functions by @mrperkett in #35
• Add function to generate group size histogram by @mrperkett in #37
• Add get_kmer_count and get_kmer_group_counts by @mrperkett in #39
• Add SequenceCollection eq and ne by @mrperkett in #44
• Add Kmers eq and ne by @mrperkett in #45
• Add SequenceCollection saving and loading by @mrperkett in #46
• Add Kmers saving and loading by @mrperkett in #47
• Add CRISPR NGG and ambiguous base filters by @mrperkett in #49
• Update read the docs requirements to include h5py by @mrperkett in #50
• Handle soft masked sequences by @mrperkett in #51
• Update documentation by @mrperkett in #52

Full Changelog: https://github.com/mrperkett/genome-kmers/commits/v1.0.0.0