genome-kmers 1.0.0 Release Notes
genome-kmers 1.0.0 adds support for the majority of k-mer calculations for k-mers defined on the forward strand.
What's Changed
- Convert project to src layout by @mrperkett in #1
- Remove unhelpful sba indices test cases by @mrperkett in #2
- Update README Intro, Setup, Basic Usage by @mrperkett in #3
- Update config info ahead of PyPI release by @mrperkett in #4
- Set up Read The Docs by @mrperkett in #5
- Add Kmers initialization methods by @mrperkett in #19
- Add Kmers sort for forward strand by @mrperkett in #20
- Add kmers sort profiling for forward strand by @mrperkett in #21
- Add kmer comparison function by @mrperkett in #23
- Add generator to yield kmers by group by @mrperkett in #25
- Add func to kmer generator to customize output by @mrperkett in #27
- Create numba funcs to get record loc info by @mrperkett in #29
- Add Kmers generate_get_kmer_info_func by @mrperkett in #31
- Add get_kmers generator by @mrperkett in #33
- Add filter functions by @mrperkett in #35
- Add function to generate group size histogram by @mrperkett in #37
- Add get_kmer_count and get_kmer_group_counts by @mrperkett in #39
- Add SequenceCollection eq and ne by @mrperkett in #44
- Add Kmers eq and ne by @mrperkett in #45
- Add SequenceCollection saving and loading by @mrperkett in #46
- Add Kmers saving and loading by @mrperkett in #47
- Add CRISPR NGG and ambiguous base filters by @mrperkett in #49
- Update read the docs requirements to include h5py by @mrperkett in #50
- Handle soft masked sequences by @mrperkett in #51
- Update documentation by @mrperkett in #52
Full Changelog: https://github.com/mrperkett/genome-kmers/commits/v1.0.0.0
Contributors
mrperkett