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Issues list

Modifications per read summary enhancement New feature or request
#416 opened Apr 10, 2025 by loipf
2
Feature request - sample sheet enhancement New feature or request
#415 opened Apr 7, 2025 by adbeggs
4
calculate the 5mC signal for the CG sites in a specific region enhancement New feature or request question Looking for clarification on inputs and/or outputs
#409 opened Mar 31, 2025 by hannan666666
1
Chunk process for summary and sample-prob enhancement New feature or request
#389 opened Feb 27, 2025 by KunFang93
3
Feature Request: Add --partition-tag option to "modkit extract calls" enhancement New feature or request
#356 opened Jan 28, 2025 by zaka-edd
2
Quality of life suggestion for motif bed documentation Improvements or additions to documentation enhancement New feature or request
#348 opened Jan 16, 2025 by Ge0rges
2
Feature request enhancement New feature or request
#337 opened Jan 9, 2025 by kamaloxfordpathology
2
Get haplotag info in modkit extract enhancement New feature or request
#310 opened Dec 6, 2024 by rowanhowellGE
1
Entropy on strand enhancement New feature or request
#301 opened Nov 18, 2024 by Ge0rges
5
Validity of correlation between different RNA modification calls enhancement New feature or request question Looking for clarification on inputs and/or outputs
#278 opened Oct 14, 2024 by mbosm
3
Redundant motifs from modkit motif search enhancement New feature or request
#272 opened Sep 30, 2024 by galenptacek
4
Request: additional output columns for extract build-available custom build produced for fix. enhancement New feature or request
#270 opened Sep 28, 2024 by OberonDixon
8
Merge bedmethyl file enhancement New feature or request
#260 opened Sep 12, 2024 by meydaria
1
How does modkit extract handle indels on reads? enhancement New feature or request question Looking for clarification on inputs and/or outputs
#249 opened Aug 21, 2024 by Fu-Yilei
4
modkit extract m6A tsv problems enhancement New feature or request
#246 opened Aug 9, 2024 by kir1to455
9
Number of reads processed by modkit enhancement New feature or request question Looking for clarification on inputs and/or outputs
#241 opened Jul 30, 2024 by ZhihanNUS
7
Ignore multiple mods in adjust-mods enhancement New feature or request
#237 opened Jul 22, 2024 by Ge0rges
1
bedgraph and bedmethyl only-tab simultaneously enhancement New feature or request
#210 opened Jun 18, 2024 by ShokodkoMariia
2
threshold and motifs enhancement New feature or request question Looking for clarification on inputs and/or outputs
#166 opened Apr 17, 2024 by TiBi-MU
1
Feature request: read from url enhancement New feature or request
#123 opened Jan 31, 2024 by wdecoster
2
modkit extract takes very long enhancement New feature or request extract modkit extract
#119 opened Jan 24, 2024 by pkerbs
7
pileup does not allow gzipped reference sequence enhancement New feature or request
#100 opened Dec 14, 2023 by KloostermanJoukje 0.2.5
1
Clearer A and B notation enhancement New feature or request
#91 opened Nov 28, 2023 by Ge0rges
3
Feature request? Position-dependent thresholding enhancement New feature or request
#88 opened Nov 23, 2023 by billytcl
4
Different number of line in the bedMethyl table among samples enhancement New feature or request
#77 opened Nov 7, 2023 by HeleneMeMartin
1
ProTip! Exclude everything labeled bug with -label:bug.