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Issues list

--significance-factor for dmr pair in region DMR modkit dmr question Looking for clarification on inputs and/or outputs
#419 opened Apr 16, 2025 by hannan666666
2
modkit summary shows unexpected proportion of methylation - is my methylation information being lost question Looking for clarification on inputs and/or outputs
#417 opened Apr 15, 2025 by eesiribloom
4
adjust-mods: unexpected A+A in MM tag question Looking for clarification on inputs and/or outputs
#413 opened Apr 3, 2025 by tramelliwe
1
calculate the 5mC signal for the CG sites in a specific region enhancement New feature or request question Looking for clarification on inputs and/or outputs
#409 opened Mar 31, 2025 by hannan666666
1
Recommended MAPQ for modification analysis question Looking for clarification on inputs and/or outputs
#408 opened Mar 30, 2025 by kamaloxfordpathology
4
visualization for entropy? question Looking for clarification on inputs and/or outputs
#405 opened Mar 27, 2025 by jmlavigne1
1
pileup on (large) metagenome - parallelization question Looking for clarification on inputs and/or outputs
#404 opened Mar 26, 2025 by brambloemen
3
Is there a way to calculate DMRs from WGBS control data/ bigwig input question Looking for clarification on inputs and/or outputs
#402 opened Mar 21, 2025 by eesiribloom
1
Question about ref_position in modkit extract results question Looking for clarification on inputs and/or outputs
#400 opened Mar 21, 2025 by Seongmin-Jang-1165
5
modkit localise arguments discrepancy question question Looking for clarification on inputs and/or outputs
#399 opened Mar 20, 2025 by jmlavigne1
11
Single sites analysis - too many significant sites and FDR correction DMR modkit dmr question Looking for clarification on inputs and/or outputs
#397 opened Mar 18, 2025 by Machadum
3
threshold of extract call of m6A question Looking for clarification on inputs and/or outputs
#395 opened Mar 13, 2025 by Seongmin-Jang-1165
1
Differential methylation call using replicate samples question Looking for clarification on inputs and/or outputs
#391 opened Mar 5, 2025 by demis001
7
Differential Methylation Analysis Using MODKIT: CPM Normalization and Handling Missing Data question Looking for clarification on inputs and/or outputs
#390 opened Feb 27, 2025 by Seongmin-Jang-1165
2
Unclear modkit pileup --region question Looking for clarification on inputs and/or outputs
#386 opened Feb 25, 2025 by Ge0rges
2
Coverage of modekit pileup results does not match the coverage displayed on IGV question Looking for clarification on inputs and/or outputs
#385 opened Feb 25, 2025 by rania-o
2
Clarification on Interpretation of 5hmC and 5mC question Looking for clarification on inputs and/or outputs
#384 opened Feb 24, 2025 by Proy321
7
Clarification on haplotagging in modkit pileup output question Looking for clarification on inputs and/or outputs
#380 opened Feb 21, 2025 by K1999ban
1
Issue in Inosine detection question Looking for clarification on inputs and/or outputs
#373 opened Feb 10, 2025 by Salvobioinfo
3
Determining Ml score threshold for quantitative comparison of methylation levels across two datasets at the same loci question Looking for clarification on inputs and/or outputs
#372 opened Feb 10, 2025 by ngamarra
2
Can modkit be run through epi2me labs? question Looking for clarification on inputs and/or outputs
#371 opened Feb 10, 2025 by irc47
1
Filtering bedmethyl file and DMR analysis DMR modkit dmr question Looking for clarification on inputs and/or outputs
#364 opened Feb 3, 2025 by baibhav-bioinfo
11
Combining 5mC with 5hmC question Looking for clarification on inputs and/or outputs
#363 opened Feb 2, 2025 by bopohdr
1
Final CpG of read detection question Looking for clarification on inputs and/or outputs
#359 opened Jan 29, 2025 by benjamin-bfeng
3
threshold modification in modkit pileup question Looking for clarification on inputs and/or outputs
#357 opened Jan 29, 2025 by baibhav-bioinfo
1
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