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v0.4.4

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@modkit-bot modkit-bot released this 09 Apr 04:37
· 8 commits to master since this release
v0.4.4
7cf558c

Adds

  • [extract] Adds alignment start and end columns
  • [extract] Adds motif annotation column
  • [localize] Allow BED4 input regions
  • [dmr] Improve logging and error reporting, adds --careful to output table of contigs that can be processed.
  • [dmr] Adds Cohen's h statistic
  • [motif, search] Adds "batch and narrow" exhaustive search algorithm
  • [motif, search] Adds structured logging

Changes

  • [all] Any output that is BED-like will have headers with "#" comment symbol
  • [dmr] Change maximum allowed coverage in MAP-based p-value from 300 to 100.

Fixes

  • [all] Correctly parse "transcript"-like contigs for --region arguments
  • [dmr] Correctly handle bedMethyl tables with multiple motifs in the name column

Documentation missing
This build comes with documentation (a manual) that is missing the description of Cohen's h statistic in the DMR output. The online version of the manual has been updated.

Changelog missing

  • [dmr] Change maximum allowed coverage in MAP-based p-value from 300 to 100.

Is not present in the tagged version of the Changelog.

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