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Update CDS manifest generation to include Synapse viewer support #810

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Update CDS manifest generation to include Synapse viewer support #810

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1f35c91
Update CDS manifest generation to include Synapse viewer support
adamjtaylor Jun 5, 2025
8d3f3e9
Update CDS manifest generation to handle undefined Synapse viewer names
adamjtaylor Jun 5, 2025
03f8651
Update CDS manifest generation to use base filename when viewer name …
adamjtaylor Jun 5, 2025
0709bca
Update CDS manifest generation to use download source category for Sy…
adamjtaylor Jun 5, 2025
369a4f6
Update CDS manifest generation to filter files by download source cat…
adamjtaylor Jun 5, 2025
75f35bf
Update CDS manifest generation to combine dbgap and open access files
adamjtaylor Jun 5, 2025
8b9e6af
Update FileDownloadModal to combine CDS and Synapse files for availab…
adamjtaylor Jun 5, 2025
b44798d
Update FileDownloadModal to enhance user experience with a summary ta…
adamjtaylor Jun 9, 2025
9507673
Update FileDownloadModal to enhance the summary table with detailed a…
adamjtaylor Jun 9, 2025
d6d822a
Update FileDownloadModal to precompute and display counts for CDS con…
adamjtaylor Jun 9, 2025
da73910
Revert to working version
adamjtaylor Jun 9, 2025
f9b4956
Update fileTable.module.scss to ensure wide-modal has a maximum width…
adamjtaylor Jun 9, 2025
231f431
Update FileDownloadModal to apply wide-modal class for improved styling
adamjtaylor Jun 9, 2025
82c4de3
Update FileDownloadModal to enhance table with detailed access method…
adamjtaylor Jun 9, 2025
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8 changes: 5 additions & 3 deletions packages/data-portal-explore/src/components/FileTable.tsx
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Original file line number Diff line number Diff line change
Expand Up @@ -93,10 +93,12 @@ function generateCdsManifestFile(files: Entity[]): string | undefined {
'parent_data_file_id',
];
const data = _(files)
.filter((f) => !!f.viewers?.cds)
.filter((f) => !!f.viewers?.cds || !!f.viewers?.synapse)
.map((f) => [
getDrsUri(f.viewers?.cds?.drs_uri, false, true),
f.viewers?.cds?.name,
f.viewers?.cds?.drs_uri
? getDrsUri(f.viewers.cds.drs_uri, true)
: `drs://repo-prod.prod.sagebase.org/${f.synapseId}`,
f.viewers?.synapse?.name,
f.atlas_name,
_.uniq(f.biospecimen.map((b) => b.BiospecimenID)).join(' '),
f.assayName,
Expand Down