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OSSS Extracellular Ephys 2026 Course

The website of the 2026 OSSS course. Currently in development, includes the working plan.

Contributing to the book

The website is a Quarto book. GitHub Actions rebuilds it from main when changes are merged, and publishes the rendered site to the gh-pages branch for GitHub Pages to serve.

To preview the website locally, run from the book folder:

python -m pip install -r requirements.txt
quarto render --to html

(requires Quarto to be installed).

This generates the website in book/_site for local review. After a PR is merged into main, CI rebuilds the site and publishes it to gh-pages automatically.

The easiest way to contribute chapters will be to make a new branch and open a PR to add a new chapter (I have been pushing to main, but will stop now).

To add a new chapter it should be sufficient to create the qmd file in the root and add the file to the index.qmd.

Style

Some things I have included, we can discuss if they are useful and worth including them across all chapters:

  • During the course we will walk them through the key code sections. Then after each natural section, we can have a 'things to try' box. We'll give them some time to play around and try these things out on their own.
  • 'Concept Notes' is a page that contains expanded definitions / explanations of concepts. For example in the introduction chapter, we mention data streams, or the fact data is stored in int16 unitless. It's a bit much to go into it in the middle of the chapter, but can link to a longer explanation. We link internally including a little 💡 by the link.

Currently this is the default quarto book style, maybe we can jazz it up as we go along.

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A repository to plan the extracellular electrophysiology course for OSSS 2026

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