ExternalProject SUNDIALS 3.2.1 - #1960

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alexsavulescu wants to merge 136 commits into

Commits on Aug 20, 2022

ExternalProject SUNDIALS 3.2.1
alexsavulescu
committed
4581ab4
ninja needs BUILD_BYPRODUCTS in ExternalProject_Add
alexsavulescu
committed
0a3692c

Commits on Dec 11, 2022

Merge branch 'master' into slds
alkino
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d38f489
Format
alkino
committed
f36e64a

Commits on May 1, 2023

Merge remote-tracking branch 'origin/master'
alkino
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daf0008
Format
alkino
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857bd86
Fix name of SUNR functions
alkino
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152e86f

Commits on May 4, 2023

Commits on May 6, 2023

update nrntest (cvode version 3 and no hhtable)
nrnhines
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174036f

Commits on May 11, 2023

Merge branch 'master' into slds
alkino
authored
554b326

Commits on May 15, 2023

Selected messages from old digest-debug branch
nrnhines
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56a1134
libcrypt for mac
nrnhines
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7e6761c

Commits on May 17, 2023

Merge branch 'master' into slds
nrnhines
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7176f4a
No need link libsundials_nvecparallel.a
nrnhines
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824732b
Merge branch 'master' into slds
nrnhines
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a2044cb
format
nrnhines
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5e0162b
Left out }
nrnhines
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c60a3eb
Revert "No need link libsundials_nvecparallel.a"
nrnhines
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fe5c851

Commits on May 25, 2023

Merge branch 'master' into slds
nrnhines
authored
d0bf3e7

Commits on May 26, 2023

"major.minor.patch" = h.CVode().version()
nrnhines
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65b13f5
eliminate pytest warning
nrnhines
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12ddfb5

Commits on May 28, 2023

CVode 3.2.1 json data for test_nrntest_fast.py
nrnhines
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84f05af

Commits on Jun 1, 2023

Merge branch 'master' into slds
alkino
authored
ffdb5fb
Merge remote-tracking branch 'origin/master'
alkino
committed
34062f3
sundials nvecparallel needs MPI
alkino
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dbfc76f
Merge remote-tracking branch 'origin/slds'
alkino
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06f2bc3
Fix FindSUNDIALS.cmake
alkino
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ff9bb0f
fix linkage
alkino
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1a84a72
Try to clean linkage with sundials
alkino
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910d9ac
Format
alkino
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7e9ddf1
Don't use corenrn if corenrn not set
alkino
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5ac7685
Fix fix and fix
alkino
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009a914
Format
alkino
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53683bf
trick depends
alkino
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9d6b033
try to help sundials to find MPI
alkino
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7dbf02f

Commits on Jun 2, 2023

set LIBDIR
alkino
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6f92bd5
-tp=haswell is not accepted by sundials
alkino
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6a4e401
Merge branch 'master' into slds
alkino
authored
0eda725

Commits on Jun 12, 2023

Merge remote-tracking branch 'origin/master'
alkino
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f9749ca
Remove too more spaces
alkino
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cfe9ef1
Merge remote-tracking branch 'origin/master'
alkino
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6279e08
CVodeSetFdata => CVodeSetUserData
alkino
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858b829

Commits on Nov 4, 2023

Merge branch 'master' into slds
nrnhines
committed
67b677c

Commits on Nov 5, 2023

eliminate some compiler warnings
nrnhines
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3777c05
update nrntest to master merged hines/update-t12
nrnhines
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8f17f69

Commits on Dec 30, 2023

Merge branch 'master' into slds
nrnhines
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93be65e
on previous master merge, resolve conflict incorrectly
nrnhines
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30ee751

Commits on Mar 9, 2024

Merge branch 'master' into slds
nrnhines
committed
8c46a46

Commits on May 7, 2024

Merge remote-tracking branch 'origin/master'
alkino
committed
9414fb6

Commits on Oct 1, 2024

Merge branch 'master' into slds
nrnhines
committed
7cf79d6

Commits on Oct 3, 2024

Commits on Oct 4, 2024

Commits on Oct 6, 2024

temporarily turn off (most) wheel builds and gitlab CI
nrnhines
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0d4cc21
adust a few tolerance values to see if more CI pass
nrnhines
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21c7826

Commits on Oct 7, 2024

Merge branch 'digest-debug-2' into digest-debug-3
nrnhines
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95b5cca

Commits on Oct 8, 2024

nrn_digest(i) will print the details of the i'th digest item.
nrnhines
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52cd8b8

Commits on Oct 9, 2024

missing include
nrnhines
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97b1089

Commits on Oct 15, 2024

Allow digest when multiple threads.
nrnhines
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3277919
digest print solvex enter y
nrnhines
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02c9d51

Commits on Oct 17, 2024

sundial RPowerR uses hoc_pow. nrn_digest(i, "abort") calls abort() on
nrnhines
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8b4d2c2

Commits on Oct 18, 2024

Documentation for nrn_digest and use_exp_pow_precision
nrnhines
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a66cc8f
nrn_digest signature consistent with documentation
nrnhines
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6910d0a
occvode.cpp -Wall free
nrnhines
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932bdff
Merge branch 'master' into hines/digest-debug-3
nrnhines
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a8e8b85
Merge branch 'master' into hines/digest-debug-3
nrnhines
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50b1163
The configure option is NRN_ENABLE_ARCH_INDEP_EXP_POW
nrnhines
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73c8c79
format
nrnhines
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71a629c
Revert "adust a few tolerance values to see if more CI pass"
nrnhines
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4d4889e
Revert "temporarily turn off (most) wheel builds and gitlab CI"
nrnhines
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befbb64
Revert "temporarily turn off CI tests of rxd"
nrnhines
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083a1c8
Merge branch 'master' into slds
nrnhines
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4c5905b
Merge branch 'hines/digest-debug-3' into hines/cv3-digest
nrnhines
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ce227b4

Commits on Oct 19, 2024

Use the neuronsimulator fork of sundials
nrnhines
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e6017d3
passes ctest -j 8 (with "-ffp-model=strict")
nrnhines
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4267638

Commits on Oct 21, 2024

Merge branch 'master' into hines/cv3-digest
nrnhines
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befec84

Commits on Oct 22, 2024

Merge branch 'master' into hines/cv3-digest
nrnhines
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8099fd1
Update test/rxd/testdata for cvode3
nrnhines
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7c670b7
document how to update rxd test data
nrnhines
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e0a6bc2

Commits on Oct 23, 2024

Revert "Update test/rxd/testdata for cvode3"
nrnhines
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8ab1989
fix typo
nrnhines
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5bdaf5e
update rxdtest repository (e0a6bc281) 2024-10-22
nrnhines
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9870f3f

Commits on Oct 24, 2024

Merge branch 'master' into hines/cv3
nrnhines
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f0d233a
cd share/lib/python/neuron/tests; python test_rxd.py --save test_rxd.json
nrnhines
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710c2c2
extend the rxd test data instructions
nrnhines
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45e0fc9

Commits on Oct 25, 2024

propagate compiler from nrn to sundials. SUNDIALS MPI_ENABLE=OFF
nrnhines
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9db5f29
Merge branch 'master' into hines/cv3
nrnhines
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5de9b21
Since sundials MPI_ENABLE=OFF have our own nvector_parallel.h
nrnhines
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4464390

Commits on Oct 26, 2024

nvector_parallel.cpp agnostic with respect to MPI_Comm
nrnhines
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5614e5d

Commits on Oct 28, 2024

cast between sunindextype and long
nrnhines
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285dada
update a cv3.json file.
nrnhines
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f17e9a8
nrnparallel_ld follows nvector_parallel style for MPI_Comm
nrnhines
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ac12c82
relax resolution requirements so macosx will pass CI without needing
nrnhines
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34b82a7
adjust tol of test_nrntest_fast.py::test_t14[cvode_long_double-3-t]
nrnhines
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4e12ea1
black format for test/.../*.py
nrnhines
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b398627

Commits on Oct 31, 2024

Changes after ctest coverage analysis.
nrnhines
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68bc030
Merge branch 'master' into slds
nrnhines
authored
1c2308c

Commits on Nov 1, 2024

Replace cvode.extra_scatter_gather with h.beforestep_callback
nrnhines
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82c2f25
rxd tests use rxdtestdata hines/data-fix af269297
nrnhines
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1204452
rxd/testdata when test/rxd/3d/test_multi_gridding_mix.py not skipped
nrnhines
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11afb3b
Merge branch 'master' into hines/cv3
nrnhines
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c084919
Replace cvode.extra_scatter_gather with h.beforestep_callback
nrnhines
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f96ebe3
use rxdtestdata hines/cvode3 721ac55a
nrnhines
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a5f2b48

Commits on Nov 2, 2024

Don't use cvode version specific filenames or keys for json data.
nrnhines
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7286d43

Commits on Nov 6, 2024

ecs_diffusion needs section to gather data.
nrnhines
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a89f3e4
Merge branch 'master' into hines/rxd-data-fix
nrnhines
authored
0467293
Merge branch 'hines/rxd-data-fix' into hines/cv3 and update testdata
nrnhines
committed
d38be72

Commits on Dec 9, 2024

Merge branch 'master' into hines/cv3
nrnhines
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091c5c0

Commits on Jun 1, 2026

Merge branch 'master' into slds
nrnhines
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7a1f69c
cmake: update nrniv_lib linking for SUNDIALS v3 submodule
nrnhines
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a4ef2f1
build: remove obsolete SUNDIALS sources
nrnhines
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6473470

Commits on Jun 2, 2026

format
nrnhines
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85dd992
test_neurondemo comparison data for cover3454-cv3
nrnhines
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64bdb8b
build: add SUNDIALS as git submodule (neuronsimulator fork)
nrnhines
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164ace7
format
nrnhines
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f15768c

Commits on Jun 3, 2026

update coding-conventions (prints black version)
nrnhines
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380c950
style: reformat rxd files with black under Python 3.10
nrnhines
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978ba25

Commits on Jun 4, 2026

build: make format-pr more robust
nrnhines
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2ac31c1

Commits on Jun 11, 2026

Compare two RxD testdata directories pairwise
nrnhines
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f3baad7
update rxdtestdata to hines/slds-data b8d97dd92b
nrnhines
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84cc3cb

Commits on Jun 22, 2026

Merge branch 'master' into slds-wt
nrnhines
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