Fix cloning of typed process outputs to also clone topics - #7556
Open
bentsherman wants to merge 1 commit into
Open
Fix cloning of typed process outputs to also clone topics#7556bentsherman wants to merge 1 commit into
bentsherman wants to merge 1 commit into
Conversation
Signed-off-by: Ben Sherman <bentshermann@gmail.com>
✅ Deploy Preview for nextflow-docs canceled.
|
jorgee
approved these changes
Aug 31, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Fix #7434
Typed process outputs (
ProcessOutputsDef) contain both outputs and topic emissions. The class is cloneable in order to support process aliasing. However,clone()was only cloning outputs, not topic emissions. This caused the pipeline to hang when aliasing a process with topic emissions.This PR fixes the clone. Confirmed locally that it fixes the reported issue.