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nextstrain / norovirus Public

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Phylogenetic: Create phylogenetic trees between recombination breakpoints#42

Draft

j23414 wants to merge 11 commits into

mainnextstrain/norovirus:mainfrom

vp1_rdrpnextstrain/norovirus:vp1_rdrpCopy head branch name to clipboard

Conversation Commits11 (11)Checks Files changed

Draft

Phylogenetic: Create phylogenetic trees between recombination breakpoints#42
j23414 wants to merge 11 commits into
mainfrom
vp1_rdrp

Commits

Commits on Nov 10, 2025

Phylogenetic: Add VP1 and RdRp to genotype builds to see if they have sufficient clock signal
j23414
committed
Phylogenetic: Fixup to avoid a trailing slash in the command
j23414
committed
Ingest: Add ORF coverage columns
j23414
committed
Phylogenetic: Work-around for GII.4 outliers
j23414
committed
fixup: Add ORF2 and ORF3 to gff
j23414
committed
Phylogenetic: Add ORF trees
j23414
committed
phylogenetic: Update links to trees
j23414
committed
Phylogenetic: Timetree by genogroup, divergence tree for all samples
j23414
committed
Phylogenetic: Outgroup root divergence trees of 'all' samples
j23414
committed
CI: Check a genogroup build instead
j23414
committed
WIP: set clock rate still out performs outgroup
j23414
committed

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