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Merged
jfy133 merged 5 commits into from
Mar 19, 2026
Merged

update GHA #1049

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6768852
update GHA
maxulysse Mar 19, 2026
8b79179
add matrix for NXF_VER
maxulysse Mar 19, 2026
abff0f9
25.04.0
maxulysse Mar 19, 2026
814911b
branches
maxulysse Mar 19, 2026
0a28024
Trigger Build
maxulysse Mar 19, 2026
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21 changes: 14 additions & 7 deletions .github/workflows/main.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -17,15 +17,22 @@ jobs:
run: python ${GITHUB_WORKSPACE}/bin/cchecker.py ${GITHUB_WORKSPACE}/nfcore_custom.config ${GITHUB_WORKSPACE}/.github/workflows/main.yml

check_nextflow_config:
runs-on: ubuntu-latest
name: Check if nextflow config runs in repository root
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
NXF_VER:
- 25.10.2
- latest-everything
steps:
- uses: actions/checkout@v4
- name: Install Nextflow
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- run: nextflow config -show-profiles ${GITHUB_WORKSPACE}
- uses: actions/checkout@v4
- name: Set up Nextflow
uses: nf-core/setup-nextflow@v2
with:
version: ${{ matrix.NXF_VER }}
- run: nextflow config -show-profiles ${GITHUB_WORKSPACE}
- run: nextflow lint ${GITHUB_WORKSPACE}

profile_test:
runs-on: ubuntu-latest
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