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Included fixes from #872 |
pontus
reviewed
Jun 25, 2025
| singularity { | ||
| enabled = true | ||
| autoMounts = true | ||
| cacheDir = "/scratch/${params.project}/singularity" |
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Does this exist already, writable for everyone with the same project set?
| executor = 'pbspro' | ||
| project = 'aa00' | ||
| storage = 'scratch/aa00+gdata/aa00' | ||
| storage = 'scratch/params.project' |
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I see there's apparently since before the "recommendation" to make a copy of the config file rather than just overriding what's needed (as typically done, e.g. as referenced from https://nf-co.re/docs/usage/getting_started/configuration).
If one does, this should have an expansion I assume? (Or could be hardcoded if a user does her own config).
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So ${params.project} rather than params.project?
pontus
approved these changes
Jul 12, 2025
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name: NCI Gadi HPC
about: added new instructions re: use of persistent sessions to docs, directed singularity cacheDir to
/scratchto avoid issues with defaulting to/homePlease follow these steps before submitting your PR:
[WIP]in its titlemasterbranchSteps for adding a new config profile:
conf/directorydocs/directorynfcore_custom.configfile in the top-level directoryprofile:scope in.github/workflows/main.yml.github/CODEOWNERS(**/<custom-profile>** @<github-username>)