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Prevent adapter trimming with porechop on PacBio reads#1012

Merged
dialvarezs merged 2 commits into
nf-core:devfrom
dialvarezs:fix/pb-read-trimming
Apr 5, 2026
Merged

Prevent adapter trimming with porechop on PacBio reads#1012
dialvarezs merged 2 commits into
nf-core:devfrom
dialvarezs:fix/pb-read-trimming

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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/mag branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@dialvarezs dialvarezs changed the title Prevent adapter trimming with porechop on PB reads Prevent adapter trimming with porechop on PacBio reads Apr 5, 2026
@dialvarezs dialvarezs merged commit 75988cb into nf-core:dev Apr 5, 2026
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2 participants