Update concoct subworkflow and modules

[dialvarezs]

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the pipeline conventions in the contribution docs
• If necessary, also make a PR on the nf-core/mag branch on the nf-core/test-datasets repository.
• Make sure your code lints (nf-core pipelines lint).
• Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
• Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

[jfy133]

Couple of things look iffy to me from the modules themselves...

[jfy133]

Where have we these gone?

[dialvarezs]

sanitizeOutput() it is. Removes the number-indexed sections from the snapshot, keeping only named ones, to make the snapshot cleaner and less redundant.

[jfy133]

Ah ok!