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Foldmason topics migration & bumpversion#11063

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EfraMP wants to merge 3 commits intonf-core:masterfrom
EfraMP:foldmason_topics_migration
Open

Foldmason topics migration & bumpversion#11063
EfraMP wants to merge 3 commits intonf-core:masterfrom
EfraMP:foldmason_topics_migration

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@EfraMP EfraMP commented Mar 27, 2026

PR checklist

foldmason/easymsa bump version and foldmason/createdb and foldmason/msa2lddtreport topics migration

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

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EfraMP commented Mar 27, 2026

Lint checks fail due to non-standard semantic versioning of Bioconda recipe (4.dd3c235-0).

Unsure on how to proceed.

@EfraMP EfraMP marked this pull request as ready for review March 27, 2026 02:53
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