gzi input for gatk4 mutect2

[mignardise]

nf-core/modules pull request

PR checklist

Closes #8789

• [✓ ] gzi path input for fasta, added more meta options for fasta, and test using a modified mutect mitochondria mode due to fast testing
• [ ✓ ] If you've fixed a bug or added code that should be tested, add tests!
• [ ✓ ] Remove all TODO statements.
• [✓ ] Emit the versions.yml file.
• [✓ ] Follow the naming conventions.
• [ ✓ ] Follow the parameters requirements.
• [ ✓] Follow the input/output options guidelines.
• [ ✓] #Add a resource bug
• [ ✓ ] Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • [✓ ] nf-core modules test <MODULE> --profile docker
    • nf-core modules test <MODULE> --profile singularity
    • nf-core modules test <MODULE> --profile conda

[maxulysse]

@apetizerr we just merged #9020 that is unfortunately modifying the same file you are.
Could you try to address these merge conflicts?

[mignardise]

@maxulysse yes sounds good