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@jfy133 jfy133 commented Jan 19, 2026

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

jfy133 and others added 30 commits February 28, 2025 21:55
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@JoseEspinosa JoseEspinosa left a comment

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LGTM! 🚀

@jfy133
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jfy133 commented Jan 20, 2026

The failure in Galah is a bug previously identified and unresolved (being conda specific), so I will follow that precedent and merge this anyway: #9420

@jfy133 jfy133 merged commit 92c7199 into nf-core:master Jan 20, 2026
116 of 120 checks passed
@jfy133 jfy133 deleted the checkm2-db-pickup branch January 20, 2026 06:12
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2 participants