Skip to content

Add Beagle5 imputation tool#210

Merged
LouisLeNezet merged 16 commits intonf-core:devfrom
LouisLeNezet:beagle5
Nov 10, 2025
Merged

Add Beagle5 imputation tool#210
LouisLeNezet merged 16 commits intonf-core:devfrom
LouisLeNezet:beagle5

Conversation

@LouisLeNezet
Copy link
Copy Markdown
Collaborator

@LouisLeNezet LouisLeNezet commented Nov 6, 2025

PR checklist

Duplicate of #200 (to fix dev merging)

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/phaseimpute branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@LouisLeNezet LouisLeNezet mentioned this pull request Nov 6, 2025
11 tasks
@LouisLeNezet LouisLeNezet self-assigned this Nov 6, 2025
@LouisLeNezet LouisLeNezet added the enhancement New feature or request label Nov 6, 2025
@LouisLeNezet LouisLeNezet added this to the v1.1.0 milestone Nov 6, 2025
@LouisLeNezet LouisLeNezet linked an issue Nov 6, 2025 that may be closed by this pull request
@LouisLeNezet LouisLeNezet requested a review from atrigila November 6, 2025 15:16
LouisLeNezet and others added 4 commits November 7, 2025 11:40
Co-authored-by: Anabella Trigila <18577080+atrigila@users.noreply.github.com>
@LouisLeNezet LouisLeNezet requested a review from atrigila November 7, 2025 13:47
@LouisLeNezet LouisLeNezet merged commit 3e7da03 into nf-core:dev Nov 10, 2025
34 of 36 checks passed
@LouisLeNezet LouisLeNezet deleted the beagle5 branch March 1, 2026 18:10
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

enhancement New feature or request

Projects

None yet

Development

Successfully merging this pull request may close these issues.

Impute vcf files / snp chip array

2 participants