Contaminant screening input -Add trim_only and raw options to --contaminant_screening_input #971

Job	Run time
Get Shards	22s
GPU Test \| docker \| 2 \| 25.10.4 \| pipeline	15m 0s
GPU Test \| docker \| 1 \| 25.10.4 \| pipeline	22m 7s
GPU Test \| singularity \| 1 \| 25.10.4 \| pipeline	26m 56s
GPU Test \| singularity \| 2 \| 25.10.4 \| pipeline	18m 54s
confirm-pass-gpu	6s
GPU Test \| docker \| 2 \| 25.10.4 \| pipeline	26s
GPU Test \| singularity \| 1 \| 25.10.4 \| pipeline	26m 56s
GPU Test \| singularity \| 2 \| 25.10.4 \| pipeline	18m 54s
Get Shards	22s
GPU Test \| docker \| 1 \| 25.10.4 \| pipeline	22m 7s
confirm-pass-gpu	6s
	2h 32m 16s

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