test: update RSEM gene-table snapshots for tximport LC_COLLATE ordering

The star_rsem/umi/bam_input pipeline tests hash rsem.merged.gene_* tables,
which are not covered by tests/.nftignore. Setting LC_COLLATE=C in the
tximport R template reorders gene-level rows, so regenerate those md5s.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

Author: pinin4fjords

tests/bam_input.nf.test.snap

@@ -1829,11 +1829,11 @@
                 "WT_REP2.biotype_counts_mqc.tsv:md5,c04c2936bbfac3bff284f96b7233b158",
                 "WT_REP2.biotype_counts_rrna_mqc.tsv:md5,12294618fe44df1e7f39348372dcb481",
                 "WT_REP2.featureCounts.tsv:md5,da2c6d621864e2f26958e2c299708c3e",
-                "rsem.merged.gene_counts.tsv:md5,060949cead024e393378bec58c82c976",
-                "rsem.merged.gene_counts_length_scaled.tsv:md5,8ceb1a2f0662630ad658d565db50c852",
-                "rsem.merged.gene_counts_scaled.tsv:md5,fdc2bb1618019953151b053107293543",
-                "rsem.merged.gene_lengths.tsv:md5,5b43d4327096c8714351fa3b147ace4b",
-                "rsem.merged.gene_tpm.tsv:md5,b4b1a0f093a5be3f43e2a5f583138709",
+                "rsem.merged.gene_counts.tsv:md5,43ac77bb055be372ee42deb5ec0199f6",
+                "rsem.merged.gene_counts_length_scaled.tsv:md5,58040cecbc89aee6e7b53761bfad19ef",
+                "rsem.merged.gene_counts_scaled.tsv:md5,7873cf3b356435d6175ff4821288be0d",
+                "rsem.merged.gene_lengths.tsv:md5,6455b4186bdf2e786017724bc00966d8",
+                "rsem.merged.gene_tpm.tsv:md5,72aa275645fde43a528e42b254285b32",
                 "rsem.merged.transcript_counts.tsv:md5,058a1780f4e0622c0cffb38ff7dcb66a",
                 "rsem.merged.transcript_lengths.tsv:md5,abcbf186029d6accc817a5b84a71e650",
                 "rsem.merged.transcript_tpm.tsv:md5,2368b7b8e5561ff2d5a0672bb2f0301b",
@@ -1872,7 +1872,7 @@
                 "i_data.ctab:md5,7e81ace0a68bfe42482420b7275de195"
             ]
         ],
-        "timestamp": "2026-05-01T16:23:34.874577699",
+        "timestamp": "2026-07-15T12:50:56.239252039",
         "meta": {
             "nf-test": "0.9.5",
             "nextflow": "26.04.0"

tests/star_rsem.nf.test.snap

@@ -1237,11 +1237,11 @@
                 "RAP1_UNINDUCED_REP2.SJ.out.tab:md5,1eb030549d877ab7fa51fe1d632ffe09",
                 "WT_REP1.SJ.out.tab:md5,5292020e46d35c14354f13696bbf0ab0",
                 "WT_REP2.SJ.out.tab:md5,3fab08b47b8b3cab91ae91dec8750152",
-                "rsem.merged.gene_counts.tsv:md5,91223fb1d835d6bc5140a5e095ad5b3e",
-                "rsem.merged.gene_counts_length_scaled.tsv:md5,ec0e98882128ff058169354fd1ccb240",
-                "rsem.merged.gene_counts_scaled.tsv:md5,59ec3256b6ecf3c58d9a86c6dfde51fd",
-                "rsem.merged.gene_lengths.tsv:md5,acdee55d5bd05d5cc83e4ca029b960b2",
-                "rsem.merged.gene_tpm.tsv:md5,8068aa3bb3369b818af7ece24977d8da",
+                "rsem.merged.gene_counts.tsv:md5,889e45a0d9cc2e069016305129a13f01",
+                "rsem.merged.gene_counts_length_scaled.tsv:md5,84a6fa0aad14b7bee4754af5e677d0b2",
+                "rsem.merged.gene_counts_scaled.tsv:md5,e86894ecc50dec68b979191898b7c9f6",
+                "rsem.merged.gene_lengths.tsv:md5,273ca6d2b937af63539c088fc4854a8c",
+                "rsem.merged.gene_tpm.tsv:md5,fecf349b2d3a267fd91c5cd45e4e8592",
                 "rsem.merged.transcript_counts.tsv:md5,535ab7cf11f6efde878283dc722dea0b",
                 "rsem.merged.transcript_lengths.tsv:md5,cb304a9c4932075da049cea5fe2a8165",
                 "rsem.merged.transcript_tpm.tsv:md5,8fe690a435900ef5a3c1cf639192ac5d",
@@ -1280,7 +1280,7 @@
                 "i_data.ctab:md5,7e81ace0a68bfe42482420b7275de195"
             ]
         ],
-        "timestamp": "2026-05-01T16:41:18.904088528",
+        "timestamp": "2026-07-15T12:54:17.149160947",
         "meta": {
             "nf-test": "0.9.5",
             "nextflow": "26.04.0"

tests/umi.nf.test.snap

@@ -1172,11 +1172,11 @@
                 "RAP1_UNINDUCED_REP2.SJ.out.tab:md5,99714fba4906a7fa8dfe6b7c40fa0c3b",
                 "WT_REP1.SJ.out.tab:md5,ed2471572082b1d06796587eebfd265c",
                 "WT_REP2.SJ.out.tab:md5,cdd10d64d78eb010bf8aca52a80f0938",
-                "rsem.merged.gene_counts.tsv:md5,fd6b2d78445f8796df12e5be60340cfc",
-                "rsem.merged.gene_counts_length_scaled.tsv:md5,8620222c35dff9a51ff0ebe9bc0375b0",
-                "rsem.merged.gene_counts_scaled.tsv:md5,c966fbcecde9645b476f12508aa1fd6d",
-                "rsem.merged.gene_lengths.tsv:md5,9f0e78cb8e7967b44f1fde71fe697e2a",
-                "rsem.merged.gene_tpm.tsv:md5,0eb38eddf36dbeb29f8c4302b058a14f",
+                "rsem.merged.gene_counts.tsv:md5,3e46cd5e4b40e5072e350b46a56b43cb",
+                "rsem.merged.gene_counts_length_scaled.tsv:md5,da23abcd6aa018aa5735f53144874e05",
+                "rsem.merged.gene_counts_scaled.tsv:md5,cc2fb5726f992791840f42af5b02e82e",
+                "rsem.merged.gene_lengths.tsv:md5,fdbe12a2f42e4d4da0d2df411949040d",
+                "rsem.merged.gene_tpm.tsv:md5,f863d40dd49fd38af9b38dbf77662ea2",
                 "rsem.merged.transcript_counts.tsv:md5,f52ea7ee6c0c74076bb00b38e1e11dc6",
                 "rsem.merged.transcript_lengths.tsv:md5,f9480624067d84644f45a932d033444f",
                 "rsem.merged.transcript_tpm.tsv:md5,b7df63f5134101587b8e5e597110fccf",
@@ -1233,7 +1233,7 @@
                 "WT_REP2.umi_extract_2.fastq.gz:md5,067ff23f8d1307ad241cd70bc186b5c1"
             ]
         ],
-        "timestamp": "2026-05-01T16:46:57.239165049",
+        "timestamp": "2026-07-15T13:02:09.156963232",
         "meta": {
             "nf-test": "0.9.5",
             "nextflow": "26.04.0"