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@@ -9,6 +9,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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### Enhancements and fixes
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-[PR #1883](https://github.com/nf-core/rnaseq/pull/1883) - Update the `tximeta/tximport` module ([nf-core/modules#12362](https://github.com/nf-core/modules/pull/12362)): add a `jq` build dependency and set `LC_COLLATE=C` for reproducible gene-level output ordering
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-[PR #1878](https://github.com/nf-core/rnaseq/pull/1878) - Add `trim_only` and `raw` options to `--contaminant_screening_input`: `trim_only` screens reads after adapter trimming but before BBSplit/rRNA removal, enabling detection of contaminants that a species-limited BBSplit index would otherwise discard; `raw` screens pre-trimming reads as a baseline ([#1870](https://github.com/nf-core/rnaseq/issues/1870))
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-[PR #1680](https://github.com/nf-core/rnaseq/pull/1680) - Raise the Nextflow floor to 25.10.4 across `nextflow.config`, the three `nf-test*` workflow matrices, and the README/ro-crate version badges; bump `nf-schema` to 2.6.1; clear the v2-parser lint warnings in local subworkflows and resync six nf-core components carrying upstream-merged strict-syntax fixes
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