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Bump Parabricks to version 4.7.1 #1899

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Bump Parabricks to version 4.7.1 #1899

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635e8ed
feat: update Parabricks version to 4.7.1
gburnett-nvidia Jul 31, 2026
a62a60a
ci: retrigger
gburnett-nvidia Jul 31, 2026
974cbd5
ci: retrigger
gburnett-nvidia Aug 7, 2026
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2 changes: 1 addition & 1 deletion modules.json
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Original file line number Diff line number Diff line change
Expand Up @@ -141,7 +141,7 @@
},
"parabricks/rnafq2bam": {
"branch": "master",
"git_sha": "0c44f69eefe8a8c373c7cdd9528b3e1d60cb895f",
"git_sha": "3e0ec6464725c64d81abe928e15a6750d5fdd272",
"installed_by": ["modules"]
},
"picard/markduplicates": {
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2 changes: 1 addition & 1 deletion modules/nf-core/parabricks/rnafq2bam/main.nf
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18 changes: 4 additions & 14 deletions modules/nf-core/parabricks/rnafq2bam/tests/main.nf.test
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28 changes: 14 additions & 14 deletions modules/nf-core/parabricks/rnafq2bam/tests/main.nf.test.snap
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9 changes: 6 additions & 3 deletions modules/nf-core/parabricks/rnafq2bam/tests/nextflow.config
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14 changes: 7 additions & 7 deletions tests/parabricks_default.nf.test.snap
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Expand Up @@ -50,7 +50,7 @@
"gunzip": 1.13
},
"PARABRICKS_RNA_FQ2BAM": {
"parabricks": "4.6.0-1"
"parabricks": "4.7.1-1"
},
"PARABRICKS_STARGENOMEGENERATE": {
"gawk": "5.1.0",
Expand Down Expand Up @@ -633,9 +633,9 @@
],
"meta": {
"nf-test": "0.9.3",
"nextflow": "25.10.3"
"nextflow": "26.04.6"
},
"timestamp": "2026-02-09T11:01:14.364447839"
"timestamp": "2026-07-31T12:53:06.381504124"
},
"Params: parabricks star_salmon (with markdups) - stub": {
"content": [
Expand Down Expand Up @@ -880,7 +880,7 @@
"gunzip": 1.13
},
"PARABRICKS_RNA_FQ2BAM": {
"parabricks": "4.6.0-1"
"parabricks": "4.7.1-1"
},
"PARABRICKS_STARGENOMEGENERATE": {
"gawk": "5.1.0",
Expand Down Expand Up @@ -1453,8 +1453,8 @@
],
"meta": {
"nf-test": "0.9.3",
"nextflow": "25.10.3"
"nextflow": "26.04.6"
},
"timestamp": "2026-02-09T11:13:00.399098759"
"timestamp": "2026-07-31T12:58:57.904720898"
}
}
}
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