Fix bugs in qc_bam and prepare_genome subworkflows and add tests#162

Merged

beatrizsavinhas merged 28 commits into

nf-core:devfrom

beatrizsavinhas:test-prepare-genome

Dec 9, 2025

Commits on Dec 2, 2025

Fix prepare_genome/main.nf
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Add tests
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Update test
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Merge branch 'dev' into test-prepare-genome
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Update prepare_genome/main.nf
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Add publishDir for PICARD_CREATESEQUENCEDICTIONARY
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Refactor tests
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Fix end of file main.nf.test
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Update CHANGELOG.md
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Update CHANGELOG.md
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Revert redundant changes in modules.config
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Update some snapshots
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More snapshot updates
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Update remaining snapshot
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Re-add changes to modules.config
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Small changes in comments in main.nf.test
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Small changes in comments in main.nf.test
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Add nextflow.config to tests
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Add EOL to nextflow.config
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Commits on Dec 3, 2025

Update PREPARE_GENOME test configs
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Update snapshots
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Add test nextflow.config
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Merge branch 'nf-core:dev' into test-prepare-genome
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Commits on Dec 4, 2025

Fix bug preventing picard_multiple_metrics files from being passed to multiqc_files
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Update CHANGELOG.md
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Commits on Dec 5, 2025

Update CHANGELOG.md
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Commits on Dec 8, 2025