Add metacache#682

Open

sofstam wants to merge 31 commits intonf-core:crazy-corgifrom

sofstam:add_metacache

Commits on Aug 28, 2025

Merge pull request #636 from nf-core/dev
sofstam
authored

Commits on Nov 21, 2025

Merge pull request #661 from nf-core/dev
sofstam
authored

Commits on Feb 5, 2026

Fix conflicts
Sofia Stamouli
committed
Start adding metacache
Sofia Stamouli
committed
Fix end of files
Sofia Stamouli
committed
Fix some errors
Sofia Stamouli
committed

Commits on Feb 6, 2026

Update usage
Sofia Stamouli
committed
Update usage with metacache
Sofia Stamouli
committed
Update output doc with metacache
Sofia Stamouli
committed

Commits on Feb 9, 2026

Add docs and update subworkflow
Sofia Stamouli
committed
Prettier
Sofia Stamouli
committed
prettier
Sofia Stamouli
committed
Nf-test for sylph
Sofia Stamouli
committed
Fix sylph snapshot
Sofia Stamouli
committed
Update snapshots
Sofia Stamouli
committed
Update CHANGELOG
Sofia Stamouli
committed
Fix CHANGELOG
Sofia Stamouli
committed

Commits on Mar 11, 2026

Merge crazy-corgi to metacache
Sofia Stamouli
committed
Resolve merge conflicts
Sofia Stamouli
committed

Commits on Mar 14, 2026

Update default.nf.test.snap
jfy133
authored

Commits on Mar 18, 2026

Update docs/usage.md

sofstam
and
jfy133
authored
Update docs/output.md

sofstam
and
jfy133
authored
Update tests/default.nf.test

sofstam
and
jfy133
authored
Update conf/test_full.config

sofstam
and
jfy133
authored
Readd dependencies
Sofia Stamouli
committed

Commits on Mar 19, 2026

Remove extra arguments from nextflow.config
Sofia Stamouli
committed
Remove parameters from nextflow schema
sofstam
committed
Add test for sylph combined report
Sofia Stamouli
committed
Add test for sylph combined report
Sofia Stamouli
committed
Prettier
Sofia Stamouli
committed
Readd multiqc snaps
Sofia Stamouli
committed