Add singlem#702

Draft

dgodin19 wants to merge 13 commits into

nf-core:devfrom

dgodin19:singlem

Commits on Aug 28, 2025

Merge pull request #636 from nf-core/dev
sofstam
authored

Commits on Nov 21, 2025

Merge pull request #661 from nf-core/dev
sofstam
authored

Commits on Feb 16, 2026

Merge pull request #688 from nf-core/dev
sofstam
authored

Commits on Mar 11, 2026

Fixes .gitattributes to stop trying to change line-endings to windows style
JackSherry6
committed
added starting main.nf and environment.yml
dgodin19
committed
Merge branch 'jack-singlem-implementation' of github.com:dgodin19/taxprofiler into singlem
dgodin19
committed
added singlem to the nextflow config and the subworkflow.nf
dgodin19
committed
made some changes for further testing. Still running into an error.
dgodin19
committed
It's getting closer to working now, just need to run it in a proper environment.
dgodin19
committed
almost got it to work - the problem is the environment error with single m, either singularity or conda environments.
Dennis Godin
committed

Commits on Mar 12, 2026

almost got the database approach to work.
Dennis Godin
committed
got it to work with predownload in a separate directory, and pointing to that directory in the database csv
Dennis Godin
committed

Commits on Mar 14, 2026

added compatibility with taxprofiler
Dennis Godin
committed