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Issues: nf-core/tools

[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
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Download: Fix support for Seqera Community Containers
#3179 opened Sep 24, 2024 by MatthiasZepper
Open 7
Renovate Dashboard 🤖
#2596 opened Dec 19, 2023 by renovate bot
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Issues list

Add subcommand for searching nf-core test-datasets command line tools Anything to do with the cli interfaces good-first-issue
#3487 opened Mar 11, 2025 by jfy133
@JulianFlesch
11
CLI helper to select EDAM ontologies for module inputs / outputs command line tools Anything to do with the cli interfaces modules Related to tools for working with DSL2 modules
#3027 opened Jun 19, 2024 by ewels
@mirpedrol
6
Lean down CLI for remote component repositories command line tools Anything to do with the cli interfaces
#2993 opened May 21, 2024 by AlexVCaron
4
Add option for custom child-template repo command line tools Anything to do with the cli interfaces Stale
#2898 opened Mar 26, 2024 by ewels
4
Add --target parameter to nf-core modules|subworkflows install command line tools Anything to do with the cli interfaces enhancement
#2732 opened Feb 6, 2024 by mashehu
Rewrite terminal version of nf-core launch command line tools Anything to do with the cli interfaces
#2464 opened Oct 5, 2023 by ewels
Add nf-core modules/subworkflows rename command line tools Anything to do with the cli interfaces enhancement infrastructure modules Related to tools for working with DSL2 modules subworkflows
#2292 opened May 18, 2023 by mashehu
Pipeline modules update: Warn if any input channels change command line tools Anything to do with the cli interfaces modules Related to tools for working with DSL2 modules
#1993 opened Nov 2, 2022 by ewels
[create] Option to set branch names command line tools Anything to do with the cli interfaces
#1961 opened Oct 20, 2022 by fabianegli Loading…
2 of 4 tasks
8
Expose the default branch setting to the CLI command line tools Anything to do with the cli interfaces
#1960 opened Oct 20, 2022 by fabianegli
1 task
Add automated tests for nf-core download command line tools Anything to do with the cli interfaces
#1627 opened Jun 9, 2022 by drpatelh
3
CLI wizard for building a Nextflow config command line tools Anything to do with the cli interfaces infrastructure
#1563 opened May 11, 2022 by ewels
4
More consistent logging command line tools Anything to do with the cli interfaces low-priority
#1534 opened Apr 28, 2022 by fabianegli
1
Docstring format convention command line tools Anything to do with the cli interfaces documentation
#1529 opened Apr 25, 2022 by fabianegli
2
use pathlib.Path instead of os.path command line tools Anything to do with the cli interfaces low-priority WIP Work in progress
#1527 opened Apr 25, 2022 by fabianegli
1
Use dunk for snazzy diff output command line tools Anything to do with the cli interfaces low-priority
#1507 opened Apr 3, 2022 by ewels
Auto-update software versions in modules automation command line tools Anything to do with the cli interfaces infrastructure
#1434 opened Mar 10, 2022 by FriederikeHanssen
1
Download: Specify config location command line tools Anything to do with the cli interfaces download nf-core download enhancement infrastructure
#1388 opened Jan 31, 2022 by ewels
Write permission error when running "download" with docker as non-root user bug Something isn't working command line tools Anything to do with the cli interfaces
#1318 opened Nov 15, 2021 by fa2k
1
Allow tools download to download a specific tag of nf-core/configs command line tools Anything to do with the cli interfaces infrastructure
#1305 opened Nov 1, 2021 by maxulysse
3
add license check to linter command line tools Anything to do with the cli interfaces linting
#1295 opened Oct 19, 2021 by klkeys
2
Refgenie Integration (Overview) command line tools Anything to do with the cli interfaces template nf-core pipeline/component template
#1239 opened Jul 29, 2021 by KevinMenden
@mirpedrol @ErikDanielsson
Automatic listing of modules versions changed on pipeline release command line tools Anything to do with the cli interfaces infrastructure modules Related to tools for working with DSL2 modules
#1236 opened Jul 28, 2021 by JoseEspinosa
1
Copy LICENSE when installing an nf-core hosted module command line tools Anything to do with the cli interfaces modules Related to tools for working with DSL2 modules
#1151 opened Jul 2, 2021 by chasemc
1
Adding tool for pipeline samplesheet creation command line tools Anything to do with the cli interfaces
#1061 opened May 7, 2021 by ggabernet
3 tasks
1
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